Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2208 ATGGGAAGAGGGAAGGTAGTTCTGGAGAGAATACAGAACAAGATCAATCGGCAAGTAACCTTCTCAAAGCGCAGAAATGGTTTGCTTAAGAAAGCCTTCGAGCTGTCTGTGCTATGCGATGCTGAAATCGCCCTTATCATCTTCTCCACCCGTGGCAAGCTTTTTCAGTACAGTAGCGCTGACATTAACAGAATCATTGAGAAGTACCGTCAATCCTGCTTCAACATGTCTCAGACTGGCGACGTAGCTGAACATCTATCGGAACAGAAACAACTGGATAGAACGCTTTCACAAGCTCGGAAGCACCTGACGCAGAAGTTGATGTCACGAATTGACGAATTACATGGAAAGGTGAACAACCTGGAGCAGGTTAACAAGCATTTGGAATCTCAGGAAAGAGGTAAATGCACCCAGATTTGTGAAGATTCAGCTAATAACCATATTTTGTTGCAAGATGTACAAGTCAATGATCAGTTTGAATCTGGAACAGCAGGTTTATTTGGGCTTCAGCAAGAGCAAACTACTGCTTCAAAAGGAAAGGAAATATAG 549 0.4317 MGRGKVVLERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSTRGKLFQYSSADINRIIEKYRQSCFNMSQTGDVAEHLSEQKQLDRTLSQARKHLTQKLMSRIDELHGKVNNLEQVNKHLESQERGKCTQICEDSANNHILLQDVQVNDQFESGTAGLFGLQQEQTTASKGKEI 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2208 182 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aed1g2208 182 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 83 - -
Aed1g2208 182 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aed1g2208 182 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Aed1g2208 182 PANTHER MADS BOX PROTEIN 87 182 - -
Aed1g2208 182 PANTHER MADS BOX PROTEIN 1 83 - -
Aed1g2208 182 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aed1g2208 182 CDD MADS_MEF2_like 2 71 IPR033896 GO:0000977|GO:0045944
Aed1g2208 182 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aed1g2208 182 Gene3D - 13 75 IPR036879 GO:0003677|GO:0046983
Aed1g2208 182 PANTHER MADS-BOX TRANSCRIPTION FACTOR 87 182 - -
Aed1g2208 182 Coils Coil 104 131 - -
Aed1g2208 182 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aed1g2208 182 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aed1g2208 182 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2208 Aed-Chr1 18420514 18425059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2208 1 128 MADS-box Gene Family AT2G45650 40.719 4.78e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aed1g2208 SRF-TF 7.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2208 K09264 - gmx:100778860 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2208 1 18420514 18425059 Aed1g2208 1 18420514 18425059 ECH