Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2201 ATGTTTCCTTTACAACGCGGCAATGAGCTGGTAATCCAGTTTTCTAATGGTTTCCACCCGCAGCACAAAATCTCCGAAGATCTCATTCTGGATAATAATCAAGATATCGATCAATCTCCTCTTGTTGATAAAAAATTGCGTACTACCCACCCAAATAAACTATTTTATCAAGGTAACCAAGAATATGCAAAAAAGATGGTTCACAGAGAGGTTGAAAAACAAAGGAGGCAAGAAATGGCTACCCTTCATGCCTCCCTTAGATCTCTTCTCCCTCTTCACTTCATCAAGCATGCATCTTGCGGTTTCACTGTCCACCAAAATAGTAGTGGTGGAGCTGTGGGGATTGAAATCAGTGGAATATTCAGTGATGAGGAAGAGGTTCCACTTTCAAAATTGCTTCAACTAGTGTTAGAAGAGGGACTTCAAGTTGTTACTTCTCTTTCCATCAAAGTCAATGGTAAATTACTCCACAATTTGCAGTGCGAGGTTGACAATTCCGACAGTGTAGATCTATCTGAGCTGAGAAGGAAATTTTCTAATGTAATTCCATCACTTAGATGTTCTGATGATCGCAGTTCATCTCAAGTGATGAACACCAGCGCAAAATATTTTGATAATTAA 621 0.3929 MFPLQRGNELVIQFSNGFHPQHKISEDLILDNNQDIDQSPLVDKKLRTTHPNKLFYQGNQEYAKKMVHREVEKQRRQEMATLHASLRSLLPLHFIKHASCGFTVHQNSSGGAVGIEISGIFSDEEEVPLSKLLQLVLEEGLQVVTSLSIKVNGKLLHNLQCEVDNSDSVDLSELRRKFSNVIPSLRCSDDRSSSQVMNTSAKYFDN 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2201 206 Pfam Helix-loop-helix DNA-binding domain 64 105 IPR011598 GO:0046983
Aed1g2201 206 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 96 - -
Aed1g2201 206 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 96 187 IPR015660 GO:0003700|GO:0006357
Aed1g2201 206 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 93 IPR036638 GO:0046983
Aed1g2201 206 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 96 IPR015660 GO:0003700|GO:0006357
Aed1g2201 206 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 96 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2201 Aed-Chr1 18363467 18365681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2201 68 178 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 29.697 2.02e-15 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed1g2201 HLH 0.00022 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2201 - - gmx:100775836 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0496 7 3605280 3607488 Aed1g2201 1 18363467 18365681 PCT