Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2195 ATGCCTTCACTCACTCTCTCTGAAACTGACACCTCTCCCAAATCCAACAGCAAGAAGAAAACGAAGAACCAATCCCTCACTGATCCCTCCGCTATTGCTATTGCAACAAAAAAAGCCTCTAAACTCAACGACGACGCCCCCGATCCCGACCACGATGCGGCTTCGGCGGGTAAGAAGACGAAGAAGCGCAAGGCTTCAGATTTAGACCCTTCCATGCCCGCGACTTTCATTGATGGGGACGACGAGACCAGTTCTGACCTCGTCGAACCCGAACCTTCTAGAGAAGACGACCACAGTAAGAAGAAGAAAAAGAAGAAAAAGGCCAAGTCCGAAGAAGAACAGCAACCTTTAGTCATGGAAAAAGAAGAAGAACCAAAGAAGGAGGATCCCAATGCCGTTTCCAAATTCAGGATTTCCGGACCCTTGAGGGAGAAGCTGAAGGAGAAGGGTATCGAATCGCTGTTTCCCATCCAGGCCATGACCTTCGACACCGTTCTCGACGGTGCTGATTTGGTTGGTCGGGCTCGTACTGGTCAGGGTAAAACTCTGGCATTTGTGTTGCCCATATTGGAGTCTTTAACTAATGGGCCACAGAAAGCATCAAGAAAGACTGGCTATGGGAGGACTCCAAGTGTTCTTGTGCTTCTGCCTACTAGGGAATTGGCTTGTCAGGTCCATGCTGATTTTGAAGTTTATGGTGGGTCCATGGGATTGAGCTCTTGTTGTTTATACGGTGGAGCACCATATCAATCTCAAGAAATGAAGCTTAGGAGAGGTGTTGATATTGTCATAGGCACACCGGGTCGTGTAAAGGATCATATTGAGAGGGGAAATATTGACCTCAGCCAACTGAAGTTTCGTGTCCTTGATGAAGCAGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTGATTCTAGGTAAGGTAGAAAATGTTAATAAAGTTCAGACACTTCTGTTCAGTGCTACTTTGCCAGACTGGGTTAAGCATATTGCTGCAAAATTTTTTAAGCCAGATAAGATAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCTAGCACCAATGTTAGGCATATTGTTCTTCCTTGTAGTAGTTCTGCCAGGGCCCAACTTATCCCAGACGTTATTCGCTGTTATAGCAGTGGTGGCCGGACAATTATATTTACCGAGACAAAAGAATCTGCTTCTCAGCTTGCAGGGACGTTGCCTGGGGCAAGAGCTCTCCATGGTGACATACAGCAATCACAACGTGAGGTTACTCTATCTGGCTTTAGGTCTGGGAAATTCATGACACTAGTTGCAACAAATGTTGCGGCTCGAGGTCTTGATATTAATGATGTTCAGTTAATTATCCAGTGTGAACCCCCACGGGATGTAGAAGCCTATATCCATCGTTCTGGACGCACAGGAAGAGCAGGTAATACTGGGGTTGCAGTTATGCTTTATGATCCAAAAAGATCGAATATACCGAGAATAGAAAGGGAGTCTGGTGTAAAATTTGAACACATATCTGCCCCTCGGCCTGATGATATTGCCAAAGCTGTTGGTGGGGAAGTTGCTGAAATGATTATCCAAGTATCTGATAGTGTGATTCCTGCATTCAAGTCTTCTGCTGAAGAGCTTTTGAACAGTTCTGGTTTGTCAGTCGTTGATTTACTTGCTAAGGCTCTTGCCAAGGCTGCTGGTTATACTGAAATAAAGCAAAGATCAATTCTCACTTCCATGGAGAACTATGTCACATTACTTCTTGAGATTGGGAAACCAATCTATACTCCATCTTTTGCCTATGCAATCTTAAGGAGATTCTTGCCTGAAGAGAAGGTTGAGGCTGTGAAAGGTCTTTCACTCACTGCTGATGGAAATGGTGCTGTTTTTGATGTACTAGTGGAAGATTTAGATACATATCTTCAAGGTCAGGAAAACGCCTCCAATGTAAGTTTAGAGGTGTTGAAAGCATTGCCAAGTTTGCAACAAAAAGAGCAATCAAGAGGTGGCAGATTTGGTGATGGTGGTCGAGGTGGGAACAGGTTTGGTGGAAGAGGTGGAGGCGGAAGGAACGGTAGATTTTCAAATGATAGGTTTTCCAATGGTGGTGGAAGAGGAGGCCGTGGCGGCAGCAACTGGGGTGGAAAGAGATGGGAAGCGTAA 2157 0.4516 MPSLTLSETDTSPKSNSKKKTKNQSLTDPSAIAIATKKASKLNDDAPDPDHDAASAGKKTKKRKASDLDPSMPATFIDGDDETSSDLVEPEPSREDDHSKKKKKKKKAKSEEEQQPLVMEKEEEPKKEDPNAVSKFRISGPLREKLKEKGIESLFPIQAMTFDTVLDGADLVGRARTGQGKTLAFVLPILESLTNGPQKASRKTGYGRTPSVLVLLPTRELACQVHADFEVYGGSMGLSSCCLYGGAPYQSQEMKLRRGVDIVIGTPGRVKDHIERGNIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVENVNKVQTLLFSATLPDWVKHIAAKFFKPDKITADLVGNTKMKASTNVRHIVLPCSSSARAQLIPDVIRCYSSGGRTIIFTETKESASQLAGTLPGARALHGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPKRSNIPRIERESGVKFEHISAPRPDDIAKAVGGEVAEMIIQVSDSVIPAFKSSAEELLNSSGLSVVDLLAKALAKAAGYTEIKQRSILTSMENYVTLLLEIGKPIYTPSFAYAILRRFLPEEKVEAVKGLSLTADGNGAVFDVLVEDLDTYLQGQENASNVSLEVLKALPSLQQKEQSRGGRFGDGGRGGNRFGGRGGGGRNGRFSNDRFSNGGGRGGRGGSNWGGKRWEA 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2195 718 MobiDBLite consensus disorder prediction 1 136 - -
Aed1g2195 718 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 373 533 IPR001650 -
Aed1g2195 718 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 692 - -
Aed1g2195 718 SMART helicmild6 399 476 IPR001650 -
Aed1g2195 718 CDD DEADc 142 344 - -
Aed1g2195 718 Pfam DEAD/DEAH box helicase 155 332 IPR011545 GO:0003676|GO:0005524
Aed1g2195 718 Gene3D - 79 345 IPR027417 -
Aed1g2195 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 488 IPR027417 -
Aed1g2195 718 Gene3D - 357 581 IPR027417 -
Aed1g2195 718 MobiDBLite consensus disorder prediction 41 68 - -
Aed1g2195 718 MobiDBLite consensus disorder prediction 660 718 - -
Aed1g2195 718 Pfam GUCT (NUC152) domain 565 660 IPR012562 GO:0003723|GO:0004386|GO:0005524
Aed1g2195 718 Pfam Helicase conserved C-terminal domain 381 476 IPR001650 -
Aed1g2195 718 CDD SF2_C_DEAD 359 485 - -
Aed1g2195 718 CDD GUCT_RH7_like 572 657 - -
Aed1g2195 718 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 162 344 IPR014001 -
Aed1g2195 718 MobiDBLite consensus disorder prediction 1 31 - -
Aed1g2195 718 SUPERFAMILY RNA-binding domain, RBD 569 652 IPR035979 GO:0003676
Aed1g2195 718 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 37 692 - -
Aed1g2195 718 SMART ultradead3 150 362 IPR014001 -
Aed1g2195 718 MobiDBLite consensus disorder prediction 108 133 - -
Aed1g2195 718 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 288 296 IPR000629 -
Aed1g2195 718 Gene3D - 582 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2195 Aed-Chr1 18329042 18334395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2195 168 482 Eukaryotic Initiation Factors Gene Family AT1G72730 32.188 6.51e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2195 K16911 - gmx:100805921 1039.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2195 1 18329042 18334395 Aed1g2195 1 18329042 18334395 ECH