Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed1g2195 | ATGCCTTCACTCACTCTCTCTGAAACTGACACCTCTCCCAAATCCAACAGCAAGAAGAAAACGAAGAACCAATCCCTCACTGATCCCTCCGCTATTGCTATTGCAACAAAAAAAGCCTCTAAACTCAACGACGACGCCCCCGATCCCGACCACGATGCGGCTTCGGCGGGTAAGAAGACGAAGAAGCGCAAGGCTTCAGATTTAGACCCTTCCATGCCCGCGACTTTCATTGATGGGGACGACGAGACCAGTTCTGACCTCGTCGAACCCGAACCTTCTAGAGAAGACGACCACAGTAAGAAGAAGAAAAAGAAGAAAAAGGCCAAGTCCGAAGAAGAACAGCAACCTTTAGTCATGGAAAAAGAAGAAGAACCAAAGAAGGAGGATCCCAATGCCGTTTCCAAATTCAGGATTTCCGGACCCTTGAGGGAGAAGCTGAAGGAGAAGGGTATCGAATCGCTGTTTCCCATCCAGGCCATGACCTTCGACACCGTTCTCGACGGTGCTGATTTGGTTGGTCGGGCTCGTACTGGTCAGGGTAAAACTCTGGCATTTGTGTTGCCCATATTGGAGTCTTTAACTAATGGGCCACAGAAAGCATCAAGAAAGACTGGCTATGGGAGGACTCCAAGTGTTCTTGTGCTTCTGCCTACTAGGGAATTGGCTTGTCAGGTCCATGCTGATTTTGAAGTTTATGGTGGGTCCATGGGATTGAGCTCTTGTTGTTTATACGGTGGAGCACCATATCAATCTCAAGAAATGAAGCTTAGGAGAGGTGTTGATATTGTCATAGGCACACCGGGTCGTGTAAAGGATCATATTGAGAGGGGAAATATTGACCTCAGCCAACTGAAGTTTCGTGTCCTTGATGAAGCAGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTGATTCTAGGTAAGGTAGAAAATGTTAATAAAGTTCAGACACTTCTGTTCAGTGCTACTTTGCCAGACTGGGTTAAGCATATTGCTGCAAAATTTTTTAAGCCAGATAAGATAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCTAGCACCAATGTTAGGCATATTGTTCTTCCTTGTAGTAGTTCTGCCAGGGCCCAACTTATCCCAGACGTTATTCGCTGTTATAGCAGTGGTGGCCGGACAATTATATTTACCGAGACAAAAGAATCTGCTTCTCAGCTTGCAGGGACGTTGCCTGGGGCAAGAGCTCTCCATGGTGACATACAGCAATCACAACGTGAGGTTACTCTATCTGGCTTTAGGTCTGGGAAATTCATGACACTAGTTGCAACAAATGTTGCGGCTCGAGGTCTTGATATTAATGATGTTCAGTTAATTATCCAGTGTGAACCCCCACGGGATGTAGAAGCCTATATCCATCGTTCTGGACGCACAGGAAGAGCAGGTAATACTGGGGTTGCAGTTATGCTTTATGATCCAAAAAGATCGAATATACCGAGAATAGAAAGGGAGTCTGGTGTAAAATTTGAACACATATCTGCCCCTCGGCCTGATGATATTGCCAAAGCTGTTGGTGGGGAAGTTGCTGAAATGATTATCCAAGTATCTGATAGTGTGATTCCTGCATTCAAGTCTTCTGCTGAAGAGCTTTTGAACAGTTCTGGTTTGTCAGTCGTTGATTTACTTGCTAAGGCTCTTGCCAAGGCTGCTGGTTATACTGAAATAAAGCAAAGATCAATTCTCACTTCCATGGAGAACTATGTCACATTACTTCTTGAGATTGGGAAACCAATCTATACTCCATCTTTTGCCTATGCAATCTTAAGGAGATTCTTGCCTGAAGAGAAGGTTGAGGCTGTGAAAGGTCTTTCACTCACTGCTGATGGAAATGGTGCTGTTTTTGATGTACTAGTGGAAGATTTAGATACATATCTTCAAGGTCAGGAAAACGCCTCCAATGTAAGTTTAGAGGTGTTGAAAGCATTGCCAAGTTTGCAACAAAAAGAGCAATCAAGAGGTGGCAGATTTGGTGATGGTGGTCGAGGTGGGAACAGGTTTGGTGGAAGAGGTGGAGGCGGAAGGAACGGTAGATTTTCAAATGATAGGTTTTCCAATGGTGGTGGAAGAGGAGGCCGTGGCGGCAGCAACTGGGGTGGAAAGAGATGGGAAGCGTAA | 2157 | 0.4516 | MPSLTLSETDTSPKSNSKKKTKNQSLTDPSAIAIATKKASKLNDDAPDPDHDAASAGKKTKKRKASDLDPSMPATFIDGDDETSSDLVEPEPSREDDHSKKKKKKKKAKSEEEQQPLVMEKEEEPKKEDPNAVSKFRISGPLREKLKEKGIESLFPIQAMTFDTVLDGADLVGRARTGQGKTLAFVLPILESLTNGPQKASRKTGYGRTPSVLVLLPTRELACQVHADFEVYGGSMGLSSCCLYGGAPYQSQEMKLRRGVDIVIGTPGRVKDHIERGNIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVENVNKVQTLLFSATLPDWVKHIAAKFFKPDKITADLVGNTKMKASTNVRHIVLPCSSSARAQLIPDVIRCYSSGGRTIIFTETKESASQLAGTLPGARALHGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPKRSNIPRIERESGVKFEHISAPRPDDIAKAVGGEVAEMIIQVSDSVIPAFKSSAEELLNSSGLSVVDLLAKALAKAAGYTEIKQRSILTSMENYVTLLLEIGKPIYTPSFAYAILRRFLPEEKVEAVKGLSLTADGNGAVFDVLVEDLDTYLQGQENASNVSLEVLKALPSLQQKEQSRGGRFGDGGRGGNRFGGRGGGGRNGRFSNDRFSNGGGRGGRGGSNWGGKRWEA | 718 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed1g2195 | 718 | MobiDBLite | consensus disorder prediction | 1 | 136 | - | - | |
Aed1g2195 | 718 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 373 | 533 | IPR001650 | - | |
Aed1g2195 | 718 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 37 | 692 | - | - | |
Aed1g2195 | 718 | SMART | helicmild6 | 399 | 476 | IPR001650 | - | |
Aed1g2195 | 718 | CDD | DEADc | 142 | 344 | - | - | |
Aed1g2195 | 718 | Pfam | DEAD/DEAH box helicase | 155 | 332 | IPR011545 | GO:0003676|GO:0005524 | |
Aed1g2195 | 718 | Gene3D | - | 79 | 345 | IPR027417 | - | |
Aed1g2195 | 718 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 210 | 488 | IPR027417 | - | |
Aed1g2195 | 718 | Gene3D | - | 357 | 581 | IPR027417 | - | |
Aed1g2195 | 718 | MobiDBLite | consensus disorder prediction | 41 | 68 | - | - | |
Aed1g2195 | 718 | MobiDBLite | consensus disorder prediction | 660 | 718 | - | - | |
Aed1g2195 | 718 | Pfam | GUCT (NUC152) domain | 565 | 660 | IPR012562 | GO:0003723|GO:0004386|GO:0005524 | |
Aed1g2195 | 718 | Pfam | Helicase conserved C-terminal domain | 381 | 476 | IPR001650 | - | |
Aed1g2195 | 718 | CDD | SF2_C_DEAD | 359 | 485 | - | - | |
Aed1g2195 | 718 | CDD | GUCT_RH7_like | 572 | 657 | - | - | |
Aed1g2195 | 718 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 162 | 344 | IPR014001 | - | |
Aed1g2195 | 718 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Aed1g2195 | 718 | SUPERFAMILY | RNA-binding domain, RBD | 569 | 652 | IPR035979 | GO:0003676 | |
Aed1g2195 | 718 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 | 37 | 692 | - | - | |
Aed1g2195 | 718 | SMART | ultradead3 | 150 | 362 | IPR014001 | - | |
Aed1g2195 | 718 | MobiDBLite | consensus disorder prediction | 108 | 133 | - | - | |
Aed1g2195 | 718 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 288 | 296 | IPR000629 | - | |
Aed1g2195 | 718 | Gene3D | - | 582 | 654 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed1g2195 | Aed-Chr1 | 18329042 | 18334395 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed1g2195 | 168 | 482 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 32.188 | 6.51e-40 | 150 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed1g2195 | K16911 | - | gmx:100805921 | 1039.25 |