Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2187 ATGCCGGTGAGGCAGATGAAAGAAAGTTGCGAGCAACACCTTGTGATCAAACCCCATTTGCAGAATCCTATGAATTCAGCCAAGAAGACAACCAAAGCAGCACAAAATGGCAATGGCAAAGGTCCACCGCTACAAGAAAACCATAACCAAACTTCGCCTCACTCAAAGAACAAGGGAAGAAGAAGGGGGAGAGGTGGCAGAAAACCCGATCAAGGGGATGTTATGATGAGGCCTAGTTGCAGGCCATGCACAGCAACACTAACAAGTAGTGCAAACGAGAGTGTTGAAAATGGTTGCATCTCTGATATGGGTTTTCCCACTTCAAGCAAGTCTTTGACCTTTGCTCGTAGGCCTGGCTATGGACAAGTTGGGACAAAATGCATTGTGAAGGCTAACCACTTCTTTGCAGAGTTACCAGACAAGGACTTGAACCAATATGATGTTACTATTACCCCAGAAGTGTCTTCTAGAACAGTAAACAGGTCTATCATAGCAGAACTTGTGAGGCTGTATAAAGAGTCTGACTTGGGGATGAGACTTCCAGCATATGATGGCAGAAAAAGTCTGTACACTGCAGGGCAGCTTCCCTTTGCTCGGAGAGAGTTTAAGATTAAGCTTGTAGATGAAGAGGAAGGAGTTAATGGCCCCAGAAGGGAAAGAGAGTACAGGGTGGTGATCAAGTTTGTTGCTCAGGCAAACTTGTATCACTTGGGCCAGTTTCTAGCTGGTAGGCGTGCTGATGCACCGCAAGAGGCACTTCAAATTCTTGATATTGTACTAAGAGAGTTGTCAACTAAGAGGTATTGCCCCATTGGGAGGTCCTTCTTTTCACCTGATATTAGAACACCACAACGGCTTGGAGAGGGATTAGAGTCATGGTGTGGATTTTACCAGATAGTGGAATTTGTTGGTCAGCTATTAGGAAAAGATGTGCTGTCAAGGCCATTGTCAGATGCTGATCGCATCAAGATTAAGAAAGCCCTTAGAGGAGTTAAAGTTGAAGTTACACACAGAGGAAGTGTGAGAAGAAAATATCGTGTTTCTGGGTTGACATCTCAACCAACAAGAGAACTTGTGTTTCCTGTTGATGAGAACTCAACTATGAAATCAGTAGTCGAATACTTCCAAGAGATGTATGGTTTCACTATTCAATATACTCACCTTCCTTGCCTTCAAGTGGGAAACCAAAAGAAGGCTAACTATTTACCTATGGAGGCCTGCAAAATTGTTGAGGGGCAACGTTATACAAAAAGATTGAATGAGAAGCAAATTACGGCTCTATTGAAAGTTACTTGCCAAAGACCTCGCGATCGGGAAAATGACATTTTACGGACTGTCCAACATAATGCTTATGATCAAGATCCTTATGCAAAGGAATTTGGAATTAAAATCAGTGAAAAGCTAGCTTCTGTTGAAGCACGAATTCTTCCTGCCCCTTGGCTTAAGTATCATGAAAGTGGGAAAGAAAAGAACTGTTTACCCCAAGTTGGTCAGTGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAGCCGGTGGGCATGCATAAACTTTTCACGGAGCGTGCAAGATAGTGTTGCTCGCACTTTTTGTAATGAGCTTGCTCAAATGTGTCAAGTATCTGGCATGGAATTTAATCCAGAGCCTGTTATCCCCATCTACAATGCCAAGCCTGAACAGGTGGAAAAAGCTTTGAAACATGTTTACCATGTGTCAGCGAGCAAAACTAAAGGAAAGGAATTGGAGCTTTTGTTAGCAATATTGCCAGACAATAATGGGTCTCTCTATGGTGATCTCAAGCGAATTTGTGAAACTGACCTTGGCTTAATTTCACAATGTTGTCTGACAAAGCATGTCTTCAAAATCACTAAACAGTACTTGGCGAATGTGTCTCTGAAGATCAATGTGAAGATGGGAGGTAGAAACACTGTACTTCTTGATGCTGTAAGCTGCAGAATACCATTGGTTAGCGACATACCAACAATAATTTTTGGAGCAGATGTAACCCACCCTGAAAATGGAGAAGACTCGAGCCCCTCAATAGCAGCTGTAGTAGCATCCCAGGACTGGCCTGAAGTGACAAAATATGCCGGTTTAGTGTGTGCTCAAGCTCATAGGCAAGAACTTATACAAGATTTGTACAAAACTTGGCATGACCCTGTTCGTGGCACAGTTAGTGGCGGCATGATCCGAGATTTACTGGTTTCCTTTAGAAAGGCAACAGGACAAAAGCCACTACGAATTATATTTTACAGGGATGGTGTAAGTGAAGGGCAATTTTATCAAGTTTTACTTTATGAGTTGGATGCAATTCGGAAGGCATGTGCTTCCTTAGAACCAAACTATCAGCCTCCAGTAACTTTCATCGTTGTGCAAAAAAGACATCATACCCGGTTATTTGCAAACAACCACAGGGACAGAAGCAGTACAGATAGGAGTGGGAATATATTGCCTGGAACTGTTGTTGATTCCAAAATCTGCCATCCAACAGAATTTGATTTCTATCTCTGCAGCCATGCTGGCATTCAGGGTACTAGTCGGCCAGCTCATTATCATGTCCTGTGGGATGAAAACAACTTCACAGCAGATGGAATTCAGTCTCTGACAAACAATCTTTGTTATACATATGCCAGGTGTACGCGCTCAGTATCAGTTGTTCCTCCAGCGTATTATGCACATTTAGCAGCATTTCGAGCACGCTTCTATATGGAACCAGATATGCAAGAGAATGGCTCTGCAGGTGATGGTAATAATGGTCATGGTTCCAAAGGAACACGGGCAGCTGGAGATTATAGTGTCAAGCCATTGCCAGACTTGAAAGAAAATGTGAAGAGAGTGATGTTTTACTGTTAA 2859 0.4267 MPVRQMKESCEQHLVIKPHLQNPMNSAKKTTKAAQNGNGKGPPLQENHNQTSPHSKNKGRRRGRGGRKPDQGDVMMRPSCRPCTATLTSSANESVENGCISDMGFPTSSKSLTFARRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVSSRTVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGQLPFARREFKIKLVDEEEGVNGPRREREYRVVIKFVAQANLYHLGQFLAGRRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPDIRTPQRLGEGLESWCGFYQIVEFVGQLLGKDVLSRPLSDADRIKIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIQYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTVQHNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQDSVARTFCNELAQMCQVSGMEFNPEPVIPIYNAKPEQVEKALKHVYHVSASKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLLDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSAGDGNNGHGSKGTRAAGDYSVKPLPDLKENVKRVMFYC 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2187 952 SMART PAZ_2_a_3 301 433 IPR003100 GO:0005515
Aed1g2187 952 Pfam Mid domain of argonaute 494 571 IPR032473 -
Aed1g2187 952 Pfam N-terminal domain of argonaute 126 260 IPR032474 -
Aed1g2187 952 MobiDBLite consensus disorder prediction 1 79 - -
Aed1g2187 952 Pfam Piwi domain 586 905 IPR003165 GO:0003676
Aed1g2187 952 SMART Piwi_a_2 585 906 IPR003165 GO:0003676
Aed1g2187 952 CDD PAZ_argonaute_like 299 410 - -
Aed1g2187 952 Gene3D paz domain 297 414 - -
Aed1g2187 952 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 57 951 - -
Aed1g2187 952 MobiDBLite consensus disorder prediction 910 933 - -
Aed1g2187 952 Pfam Argonaute linker 2 domain 437 483 IPR032472 -
Aed1g2187 952 Pfam Argonaute linker 1 domain 270 298 IPR014811 -
Aed1g2187 952 Pfam PAZ domain 323 427 IPR003100 GO:0005515
Aed1g2187 952 Gene3D - 654 952 IPR036397 GO:0003676
Aed1g2187 952 MobiDBLite consensus disorder prediction 23 52 - -
Aed1g2187 952 Gene3D - 475 648 - -
Aed1g2187 952 PANTHER PROTEIN ARGONAUTE 10 57 951 - -
Aed1g2187 952 CDD Piwi_ago-like 455 905 IPR045246 -
Aed1g2187 952 SUPERFAMILY PAZ domain 300 451 IPR036085 GO:0005515
Aed1g2187 952 SUPERFAMILY Ribonuclease H-like 577 907 IPR012337 -
Aed1g2187 952 ProSiteProfiles Piwi domain profile. 585 906 IPR003165 GO:0003676
Aed1g2187 952 ProSiteProfiles PAZ domain profile. 297 411 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2187 Aed-Chr1 18261560 18269757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2187 1 952 Eukaryotic Initiation Factors Gene Family AT5G43810 78.921 0.0 1586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2187 K11593 - gmx:100816999 1851.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1823 11 21443871 21446174 Aed1g2187 1 18261560 18269757 PCT