Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2185 ATGGTACCTTCCCTTAACGCAGCGTTTGGCAACCAACGTATCGATTCGCGACAACTCCCCAAATATTCAAATCCACCGCAAACGCTGCCTCTAGATTTTAGCCTTCTAGGGTTTCTCTTTCCCCCCTCCCATTCTCCACTTCCCAATCCGCGGACCTCATCGGAGCCAATGCAGATTCTTCACTCCGACAAACCCGCGCCCGAGCGTCGCGACTCGCCGGAGAAACCCGAAGACCCTAACACCACCACCGATTCTCTCGACTCCGGAACCGACGACGGTGCCGCTCTCGATGTCACCGGAAAAAGCGTCGAGTTTCCGGCGGCGGAGAACGCCGAGGACTCCGCGGAGAGCCTTTACGTCTACAAGAATGTTTATAGCTTGATTCCAAAGTCTGTTTCGCGCCTCGCTCGGTTGCGAACGCTGAAGTTCTTCGGAAACGAGATTAACCTGTTTGCGCCGGAGTTCGGGAGCTTGACGGCGTTGGAGTGCTTGCAGATGAAGATTTCCTCGCCGGGGATTGGAGGCTTGCCGTTGCACACGCTCAAGGGTTTGAAGGAACTCGAACTCTCCATAGGACCTCCCAGACCTTCGGCTTTTCCGATTTTGACCGAGATTTCAGGTCTCAAGTGCTTGACCAAGCTTTCCATTTGTCACTTCTCTATACGATACCTTCCTCCGGAAATTGGATGCTTGAAGAAACTGGAGTATCTTGATCTTTCGTTCAACAAAATGAAGACTTTACCAGCGGAGATTAGTTATTTGGAAGGCTTGATATCGATGAAGGTTGCGAATAATAAGTTGGTGGAACTGCCGTCAGCTATGTCTTCTCTGTCAAGGTTGGAGAGTTTGGACCTGTCCAATAATAGGTTGACTTCGTTAGGCTCCCTTGAACTTGCATCAATGCATAGACTTCAGAAGTTAAATCTTCAGTACAACAAGCTGCTCAGGATTTTCCAAATTCCTTCATGGATATGTTGTAATATGGAGGGAAATGATGAAGCTAGATGCAAAGATGATTGCAGTTCCTCTGTTGAAATGGATCTCTATGAAAGCAACTTTCAGGAAAACGATGAAACCCTTTCTGACGGCCCTCATAATACCTCATCAAGCATGTTAACAAGCTCCTCATCTAGCAGTAGATGTTTTGCATCCCGGAAGTCAGGCAAACGGTGGAAACGGCGGTATTATTTACAGCAAAAAGCTCGTCAAGAACGGTTGAACAACAGCAGGAAGTGGAAAGCTGTAGATCATGACCAGTTGTTGAGCAAGAAGATTCACAGGATTTCTGAACCAGGAACTTGTGATAGCCTTGCTTCTGAAAGTTGTGCAGAAATTGTATCAGAGAATGGGAGCCTGGATGATAATAATAAAAGAATATTCTCTGAACAAGCAGTAAATGACAATGCAATTGATAATGTTAACAATGATGAAGTAATTATTGAAAAACACTTTTCTGGAGAAGATTGCCGCACTACTGAAAGCAAAGATGAAAAAGATGCATCCTTATGCTCCATAGAGAAGAGGCAAAGTGAACAGGATGAAGCATCTTGTTTAGAACTTTTGGAGTGTGTTTCTAAATCAAAGAGACATTTAGATCAGGATCTTGATAATCCTAAACCTTGCAAGTCTAGAAAATCAATTAGTTCTAGTTCATTATTGTCTTGCAAGTACAGCAAGATCTCATTTTGTGACATTGAAGACCATCTATCCGATGGCTTTTATGATGCTGGACGAGATCGGCCGTTTATGCCTCTTGAGACTGCTCAGGCATTGGTCTATAATTTGAAAAAGTTAAATGGTTTAAACAGACATGGGAACCAGGATGGGGTTGATAACTTGCAGACGGCATCACTACTTGCACTCTTTGTATCGGATCATTTTGGTGGCAGTGATAGAAGTGCTATTGTAGAAAGGGCACGGAAATCTGTGTCTGGTTCAAACTATAATAAGCCTTTTGTCTGTACATGCTCAGCTGGAGGCAGCACCAGTATAAGTGCTTCCACTCAACCAGTTGCAAACACCATAGAAGATATCACTCTTTCTAAGATGTCAGAAAAATCTCTTCTCTCTATAAAAAAAGGGCGAAATTCAATCATAGTTCCAATTGGCTCTGTGCAGTATGGTGTATGTAGACATAGAGCTCTGCTTTTTAAGTATTTATGTGATCACATGGACCCACCAGTTCCTTGTGAGCTTGTCAGGGGATACCTAGATTTTTCACCACATGCCTGGAATATCATTCTAATTAAGAGGGGTGCTACCTGGGTTCGAATGCTGATTGATGCCTGTCGACCTCTTGATATAAGAGAAGAGAAAGATCCTGAATACTTTTGCAGGTACATACCTCTTAATCGAATCACAATCCCTCTATCATCTAGAGGAAGTCCAGGTCCTGATTATTCTTTTCCATCTCTCACTACATGTGATGAACTTGAGACAAAGGCTTCAACAACTTTAGTTAAATGCAAATTTGGAGCAGTTGAGGCTGCAGCAAAGGTGCGTACTTTGGAAGAGCAGGGGAGTTCGGCAGACAAAATTAAAAACTTTGAATATAATTGTTTGGGAGAAATTAGAATTCTTGGTGCTTTAAAACATCCCTGCATAGTGGAAATGTATGGACACCAAATGTCATATCAATGGTCTGTCTCAGCTGATGGTAAACCTGAAAGCCGTGTATTAAGATCTGTAATTTTTATGGAGTATGTGGAAGGGGGCTCCTTAAAAAACTATCTGGAGAAGCTGTCAGAAGCTGGTGAAAAGCATGTTCCTGTGGAGTTGGCTTTGCATATCGCCAAAGATGTCTCATGTGCTTTGTCAGAGCTGCACTCAAGGCACATAATTCATCGTGACATTAAAAGTGAAAACATTCTGTTTGATTTGGATAGGAAAAGAGACGAAGGAACTCCCACTGTGAAGCTCTGTGATTTTGATAGTGCAGTGCCACTAAGATCAACTATACATGCATGTTGTATTGCTCATGTGGGAACACCTCCTCCCGGTGTATGTGTTGGAACACCTCGGTGGATGGCTCCAGAGGTTATGCGGACTATGTATAAGGAAAACTCGTATGGATTGGAAGCTGACATTTGGTCTTTTGGATGTTTACTTTTGGAGATGCTGACTCTGCAAATTCCATATTCTGGACTTTCTGATTTACATTTCGTTGATAATCTCAAGACGGGTAAACGACCACAATTAATTGATGAGCTGGAGTTATTGAGTTCAATGAATGAACCCACAATGATTCCATCTGGTGAAGATCTGGAAAAATCAGATGCTGAGGTAGACATGTTGAAATTCCTTGTTGATTTGTTTCATAAGTGCGTGGAAGAAAATCCAAGCAAACGTCCTACAGCTGAAGAAATCCATAAAATGCTGCTTGAACACACAGGTCCCTTACAAGAAGTTTAA 3411 0.4298 MVPSLNAAFGNQRIDSRQLPKYSNPPQTLPLDFSLLGFLFPPSHSPLPNPRTSSEPMQILHSDKPAPERRDSPEKPEDPNTTTDSLDSGTDDGAALDVTGKSVEFPAAENAEDSAESLYVYKNVYSLIPKSVSRLARLRTLKFFGNEINLFAPEFGSLTALECLQMKISSPGIGGLPLHTLKGLKELELSIGPPRPSAFPILTEISGLKCLTKLSICHFSIRYLPPEIGCLKKLEYLDLSFNKMKTLPAEISYLEGLISMKVANNKLVELPSAMSSLSRLESLDLSNNRLTSLGSLELASMHRLQKLNLQYNKLLRIFQIPSWICCNMEGNDEARCKDDCSSSVEMDLYESNFQENDETLSDGPHNTSSSMLTSSSSSSRCFASRKSGKRWKRRYYLQQKARQERLNNSRKWKAVDHDQLLSKKIHRISEPGTCDSLASESCAEIVSENGSLDDNNKRIFSEQAVNDNAIDNVNNDEVIIEKHFSGEDCRTTESKDEKDASLCSIEKRQSEQDEASCLELLECVSKSKRHLDQDLDNPKPCKSRKSISSSSLLSCKYSKISFCDIEDHLSDGFYDAGRDRPFMPLETAQALVYNLKKLNGLNRHGNQDGVDNLQTASLLALFVSDHFGGSDRSAIVERARKSVSGSNYNKPFVCTCSAGGSTSISASTQPVANTIEDITLSKMSEKSLLSIKKGRNSIIVPIGSVQYGVCRHRALLFKYLCDHMDPPVPCELVRGYLDFSPHAWNIILIKRGATWVRMLIDACRPLDIREEKDPEYFCRYIPLNRITIPLSSRGSPGPDYSFPSLTTCDELETKASTTLVKCKFGAVEAAAKVRTLEEQGSSADKIKNFEYNCLGEIRILGALKHPCIVEMYGHQMSYQWSVSADGKPESRVLRSVIFMEYVEGGSLKNYLEKLSEAGEKHVPVELALHIAKDVSCALSELHSRHIIHRDIKSENILFDLDRKRDEGTPTVKLCDFDSAVPLRSTIHACCIAHVGTPPPGVCVGTPRWMAPEVMRTMYKENSYGLEADIWSFGCLLLEMLTLQIPYSGLSDLHFVDNLKTGKRPQLIDELELLSSMNEPTMIPSGEDLEKSDAEVDMLKFLVDLFHKCVEENPSKRPTAEEIHKMLLEHTGPLQEV 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2185 1136 Pfam Leucine rich repeat 259 314 IPR001611 GO:0005515
Aed1g2185 1136 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 116 586 - -
Aed1g2185 1136 Pfam Protein kinase domain 844 1124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g2185 1136 SUPERFAMILY RNI-like 118 324 - -
Aed1g2185 1136 Gene3D Transferase(Phosphotransferase) domain 1 804 1133 - -
Aed1g2185 1136 SMART LRR_bac_2 277 296 - -
Aed1g2185 1136 SMART LRR_bac_2 231 250 - -
Aed1g2185 1136 SMART LRR_bac_2 254 273 - -
Aed1g2185 1136 SMART LRR_typ_2 301 327 IPR003591 -
Aed1g2185 1136 SMART LRR_typ_2 135 158 IPR003591 -
Aed1g2185 1136 SMART LRR_typ_2 277 300 IPR003591 -
Aed1g2185 1136 SMART LRR_typ_2 231 254 IPR003591 -
Aed1g2185 1136 Gene3D Ribonuclease Inhibitor 104 345 IPR032675 -
Aed1g2185 1136 ProSiteProfiles Leucine-rich repeat profile. 233 254 IPR001611 GO:0005515
Aed1g2185 1136 SUPERFAMILY Cysteine proteinases 706 764 IPR038765 -
Aed1g2185 1136 ProSiteProfiles Protein kinase domain profile. 813 1126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g2185 1136 MobiDBLite consensus disorder prediction 62 81 - -
Aed1g2185 1136 MobiDBLite consensus disorder prediction 356 381 - -
Aed1g2185 1136 SUPERFAMILY Protein kinase-like (PK-like) 825 1126 IPR011009 -
Aed1g2185 1136 PANTHER BNAC08G43810D PROTEIN 588 1130 - -
Aed1g2185 1136 Pfam Ethylene-responsive protein kinase Le-CTR1 679 751 - -
Aed1g2185 1136 SMART LRR_sd22_2 231 256 - -
Aed1g2185 1136 SMART LRR_sd22_2 277 298 - -
Aed1g2185 1136 PRINTS Leucine-rich repeat signature 234 247 - -
Aed1g2185 1136 PRINTS Leucine-rich repeat signature 277 290 - -
Aed1g2185 1136 PANTHER BNAC08G43810D PROTEIN 116 586 - -
Aed1g2185 1136 ProSiteProfiles Leucine-rich repeat profile. 279 300 IPR001611 GO:0005515
Aed1g2185 1136 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 588 1130 - -
Aed1g2185 1136 SMART serkin_6 805 1126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g2185 1136 ProSitePatterns Serine/Threonine protein kinases active-site signature. 946 958 IPR008271 GO:0004672|GO:0006468
Aed1g2185 1136 MobiDBLite consensus disorder prediction 44 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2185 Aed-Chr1 18232714 18239774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2185 856 1130 MAP Kinase Kinase Kinase AT1G63700 29.455 5.16e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Aed1g2185 Pkinase 6.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2185 - - gmx:100819959 1899.4