Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2173 ATGAACGGCGGCGCCACCACCGCCACCTTCCGATCCATCCTCGACAAGCCCCTCACCCAGCTCACCGAGGATGACATTTCTCAGCTCACTCGCGAAGACTGTCGCAGATTCCTCAAAGAAAAAGGGATGCGCAGGCCTTCCTGGAACAAATCGCAGGCGATCCAACAGGTCATTTCCCTGAAAGCGCTTCTGGAACCTTCCGACGATGATACCCTTCCTCCTCCCGCCATGCACCACCACCATACCCATGCTTCTCTTCAAACTCAAGTGAATTTGAGTGAACCTCCTCCACCTGAAGAATCCACTTTTCATGCTGCTGAAGACGTTCAGAAATCTGCGTCATCTGGGGAAAAGCCTACGGAAACTAATGACACCAACGTTGCTAGCCCCAAAGGGTGTGCAACTAGTGGATCATTTGGGCAAATGACAATTTTCTATTGTGGTAAGGTGAATGTCTATGATGGAGTCCCACCTGATAAGGCACGAGCAATCATGCAGCTTGCGGCGAGTCCTGTCCAATTTAATCAGGATGATCCTTTAAATGGAAATGCAGCTGTTTGGACTTCTCCTTACCACTTATCGATGGATAAGGATATACTCATTCCTGTTGATACAACAATCCTTCAGGTTGCACAAGCAGATAAGATAGTGGAATATCCTCTGCAATATAGAGAGAAAGGGAGCATAGCTCGTGATGCTGAGGGTCAGGCAAGCAGAAAGGTGTCATTGCAGCGATATCTTGAAAAGCGTAAGGACAGGGGAAGATTGAAAAGCAAGAAATTGACTGGGATAACTTCATCTAACTTCGAGATGTATTTGAACCTTCCAGTGAGGGTCCATGCCTCAAATGGGAATTCAAGCCGTAGTAGTACTAGCTCTCCACCACAGCCAAGACTGCCTCTTGTTTCGAGTGGTTCAGCTGACAACCAGCTAAAGGTTGCTCTTCCCTATGATCTCAATGACAAAGAAAAGGTGGAAAATTATGAAGAGAAGTTGAAGAACTTCTACACTGAGCACATTCATCAGGATGAAGAGATTCGGTATTGTTTGGAAGGCAGTGGCTACTTTGATGTGCGAGACAAGGCTGATCACTGGATTCGCATTTTGATCAAAGCCGGTGATCTGATCATTTTACCCGCTGGAATCTATCATCGCTTCACCCTAGACCCAAGTAACTATGTGAAGTTAATGAGGTTGTTTAAGGGCGAGCCAGTGTGGACAGCATATAATAGACCACAGGAACATAATCCTGCTAGAAAGGAATACATTAAGGACCTGACCAAGAAATTTGGAGTGCCACTTGCAGCTCATTAG 1314 0.4642 MNGGATTATFRSILDKPLTQLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQVISLKALLEPSDDDTLPPPAMHHHHTHASLQTQVNLSEPPPPEESTFHAAEDVQKSASSGEKPTETNDTNVASPKGCATSGSFGQMTIFYCGKVNVYDGVPPDKARAIMQLAASPVQFNQDDPLNGNAAVWTSPYHLSMDKDILIPVDTTILQVAQADKIVEYPLQYREKGSIARDAEGQASRKVSLQRYLEKRKDRGRLKSKKLTGITSSNFEMYLNLPVRVHASNGNSSRSSTSSPPQPRLPLVSSGSADNQLKVALPYDLNDKEKVENYEEKLKNFYTEHIHQDEEIRYCLEGSGYFDVRDKADHWIRILIKAGDLIILPAGIYHRFTLDPSNYVKLMRLFKGEPVWTAYNRPQEHNPARKEYIKDLTKKFGVPLAAH 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2173 437 CDD cupin_ARD 326 408 IPR004313 GO:0010309
Aed1g2173 437 MobiDBLite consensus disorder prediction 107 132 - -
Aed1g2173 437 PANTHER PROTEIN TIFY 4B-LIKE ISOFORM X1 7 312 - -
Aed1g2173 437 Hamap 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [ADI1]. 243 421 IPR027496 GO:0016491|GO:0019509
Aed1g2173 437 Pfam tify domain 141 169 IPR010399 -
Aed1g2173 437 SUPERFAMILY RmlC-like cupins 323 427 IPR011051 -
Aed1g2173 437 Pfam Jas motif 236 253 IPR018467 -
Aed1g2173 437 SMART tify_2 135 170 IPR010399 -
Aed1g2173 437 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 7 312 IPR040390 -
Aed1g2173 437 Gene3D Jelly Rolls 318 429 IPR014710 -
Aed1g2173 437 MobiDBLite consensus disorder prediction 282 304 - -
Aed1g2173 437 MobiDBLite consensus disorder prediction 66 132 - -
Aed1g2173 437 MobiDBLite consensus disorder prediction 82 96 - -
Aed1g2173 437 Pfam ARD/ARD' family 321 408 IPR004313 GO:0010309
Aed1g2173 437 ProSiteProfiles Tify domain profile. 135 170 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2173 Aed-Chr1 18163931 18171399 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2173 1 282 Tify Gene Family AT4G14720 44.904 3.78e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Aed1g2173 ARD 5e-42 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2173 - - gmx:100808970 541.962