Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2166 ATGGCCGTCGGAAAGAACAAGCGCATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAGGCAGCTGATCCCTTTGCCAAGAAGGATTGGTATGACATCAAGGCTCCTTCTGTTTTTCAAGTGAAGAATGTTGGCAAAACCCTCGTCTCTCGTACTCAGGGTACCAAGATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCCTTGGCTGATCTTCAAGGGGATGAGGATCATTCATTCAGGAAGATTAGGTTGAGAGCTGAAGATGTGCAAGGGAAGAACGTTCTGACAAATTTTTGGGGTATGGATTTCACAACTGACAAGCTGAGGTCATTGGTGCGAAAATGGCAAACTCTAATTGAATCCCATGTGGATGTGAAGACAACTGATGGTTACACATTGAGGATGTTTTGCATTGGATTTACCAAGAGAAGAGCTAACCAGGTGAAGAGAACCTGTTACGCACAATCAAGCCAGATTAGACAGATTCGTAGGAAGATGAGGGAGATCATGGTCAACCAGGCAGCAGCATGTGATTTGAAGGAGTTGGTCCGCAAGTTTATTCCTGAGATTATTGGAAAAGAGATTGAGAAGGCAACTTCTAGTATTTATCCTCTGCAGAATGTGTTTGTTCGAAAAGTCAAGATCCTTAAAGCTCCTAAGTTTGATCTTGGCAAACTGATGGAGGTTCATGGAGATTACTCAGAAGATGTTGGTGCAAAGGTAGACAGACCTGCTGAGGATATAGTGGAGGAACCCACCGAAATTGTTGGAGCTTGA 783 0.4419 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDHSFRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIESHVDVKTTDGYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMREIMVNQAAACDLKELVRKFIPEIIGKEIEKATSSIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDYSEDVGAKVDRPAEDIVEEPTEIVGA 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2166 260 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Aed1g2166 260 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 260 - -
Aed1g2166 260 MobiDBLite consensus disorder prediction 1 20 - -
Aed1g2166 260 MobiDBLite consensus disorder prediction 1 15 - -
Aed1g2166 260 Hamap 40S ribosomal protein S1 [RPS3A]. 1 260 IPR027500 GO:0003735|GO:0005840|GO:0006412
Aed1g2166 260 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 260 - -
Aed1g2166 260 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Aed1g2166 260 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2166 Aed-Chr1 18095539 18098230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2166 1 260 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 86.260 1.96e-163 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2166 K02984 - gmx:100818730 466.077