Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2163 ATGGACACGCCAGATAGGAGCAAGATCACCACCCCTCTTTCCCAATTTGAGGATTCGCCTGTATTTAACTATATCAGTAATCTATCTCCTATAGAACCCGTTAAATCTCTCCACGTTACTCAGACATTCAACTCCTATAGCTTTTCATCCCCTCCATCTGTTTTCGCATCACCCCATGTCAACTGTCACAAGGAATCCAGATTCCTCAGGAGGCATAACCTTTTGGAGACATCCAAACCTAAGGTTTCATCTGAAGATGTAAATAATGTTTATTCATGTGAAAAGACTCCTGCAGATTCAACTCGAGCATGTCATGAATCAAGTGAGCTACAGGAAAATACTGCTCAAAAGATTTCCATAGGAGATGCCTCAATTGAGCCATGTAGTGGAAACCCAAATATCTCAATTGAGCTTCCACAAGTCTTAAAATATAATTTGGGTAGCCCTGGGTATGAACCTCTGCTCTGTGGTGATGAGGCTAACTCTCTTTTGCAATTGTCTGGCAAGCCAGCATCAGATGTTGCCTATGTTCCAGAAGGCTCTGAGAAAGATTCCATTGAGGGTGAAATACATCTTCCGGGATTATGTAAGATTAAGGAGGCTAAAATGGAAAGCCCGGATTGTGGTGTGGATGGTTTAATTACTGAAGCCTCGGATCTGTTGATGTTTAGCCCCCAAAATGTGACAGAAGCTTTTAAGGGTTTAAATAAACAATTAAATCCTTCAATAGACCTTAGCAATTACATGACTGTGTTGCCACAATCTGCCACCAATGATGGTCGACAAATGCACATTGGTAATGCAGCAGTTGCTTCTGGTTCACAACATGAAATTGAAGATCATCCTTCTGAATCAGCGGCAGCCACAGCAACAGGTCAGAAACAGGACAATCTTGCCAATGTTGCTTTGGTGGCTAGCAATCCAAGTGAGAAAATGGATGATAAGCTTATTTATGTGACACACCGTGGTATACGGAGACGCTGTCTAGATTTTGAGATGGTCAGTGTGCAAAGGAAGAACTCAGCTGATAATTCAAACACCAACCCAAGTGCAGCAAAATCTGATATTGGTAATGAAAAGCAACTGCTTCCCACAAAACACAGCGGGGATTCACGGAGGTGTGTTTTGCCAGGAATTGGTTTGCACTTGAATGCACTTGCAAGCTTAAATGATTGCAAAAACATAAAAATTGAAAAGTTGTCATCTGGAAGGCAACCTAATCTGCCCAGCTCTCCTTCATCTGTGCAACTCTTTGCAAGCCAAGAAAATCAACTATCATTGGTACCTGCATCAGTGGAAAGAGATTTGGAGCCTTTAGAGAATGAGGTTCAGCCTGGTGAAGATTGTACCCAGTCATTGGTTCAGATGGCTGGTGAAGATTCCCTGCAGAATAGCCCGAAAAAGAAAAGGCAACCTGAGACCAAAACTCGATTTTACAGGCGCAAGGTGGAACCAGCTGGGGAAGGGGAGTCTTGCAAACGTTGTAATTGTAAGAAATCAAAATGTTTGAAGCTTTATTGTGAGTGTTTTGCTGCTGGAGTCTACTGCATAGAACCTTGTGCATGTCAGGATTGCTTCAATAAGCCTATTCATGTTGATACTGTTCTTCAAACTCGCCAGCAGATTGAGTCTCGTAATCCACTTGCATTTGCTCCTAAAGTCATTCGAAGTTCTGATTCTGTATCTGAAATTGGGGATGACCCTAACAAAACTCCAGCTTCAGCACGACACAAAAGAGGATGTAATTGCAAGAAATCAAGCTGCCTAAAGAAATATTGTGAATGTTATCAGGGTGGTGTTGGTTGCTCCGTAGGCTGTAGATGTGAAGGATGCAAGAACACATATGGTCGAAAGGATGGTTCTGTTCCTTCTGGATTAGAAGCCGAGCCCGAAGAACAAGCAGAAGCATGTGAAAAGGGTGTGGTGGAAAATGCTTCCCTGAAAACTGAAACTCAGAATATTGAAGACCATCCAGACCAATCTCTTGCTACAACACCATTACCGCTTTCCAGATCATTGCTCCCATTAGTACCCTTTTCATCGAAGGGTAAGCCACCAAGATCTTTTGTTACTACCATCTCCAGTTCTGGATTGTTTGTCAGCCAAAAGCTTGGGAAATCAACTGCTCCGCCGCCTCAACCGATATGTGAAAAGCCTTTGCAAACTGTTCCAGATGATGACACTCCTGTCACCTGCATCAAAACTTCTTCTCCCAATGGCAAGAGGATCTCCTCTCCTAATTGTGATAACATGGGATCATCACCTACTACTCGCAGAGGTGGGAGGAAGTTGATATTACAATCTATCTCTTCATTTCCTTCTCTCACCCCTCACCATTAG 2340 0.4291 MDTPDRSKITTPLSQFEDSPVFNYISNLSPIEPVKSLHVTQTFNSYSFSSPPSVFASPHVNCHKESRFLRRHNLLETSKPKVSSEDVNNVYSCEKTPADSTRACHESSELQENTAQKISIGDASIEPCSGNPNISIELPQVLKYNLGSPGYEPLLCGDEANSLLQLSGKPASDVAYVPEGSEKDSIEGEIHLPGLCKIKEAKMESPDCGVDGLITEASDLLMFSPQNVTEAFKGLNKQLNPSIDLSNYMTVLPQSATNDGRQMHIGNAAVASGSQHEIEDHPSESAAATATGQKQDNLANVALVASNPSEKMDDKLIYVTHRGIRRRCLDFEMVSVQRKNSADNSNTNPSAAKSDIGNEKQLLPTKHSGDSRRCVLPGIGLHLNALASLNDCKNIKIEKLSSGRQPNLPSSPSSVQLFASQENQLSLVPASVERDLEPLENEVQPGEDCTQSLVQMAGEDSLQNSPKKKRQPETKTRFYRRKVEPAGEGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCACQDCFNKPIHVDTVLQTRQQIESRNPLAFAPKVIRSSDSVSEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSVGCRCEGCKNTYGRKDGSVPSGLEAEPEEQAEACEKGVVENASLKTETQNIEDHPDQSLATTPLPLSRSLLPLVPFSSKGKPPRSFVTTISSSGLFVSQKLGKSTAPPPQPICEKPLQTVPDDDTPVTCIKTSSPNGKRISSPNCDNMGSSPTTRRGGRKLILQSISSFPSLTPHH 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2163 779 ProSiteProfiles CRC domain profile. 491 616 IPR005172 -
Aed1g2163 779 MobiDBLite consensus disorder prediction 271 293 - -
Aed1g2163 779 MobiDBLite consensus disorder prediction 338 371 - -
Aed1g2163 779 MobiDBLite consensus disorder prediction 338 355 - -
Aed1g2163 779 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 779 IPR044522 GO:0003700
Aed1g2163 779 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 579 614 IPR005172 -
Aed1g2163 779 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 493 528 IPR005172 -
Aed1g2163 779 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 779 - -
Aed1g2163 779 SMART CXC_2 490 531 IPR033467 -
Aed1g2163 779 SMART CXC_2 576 617 IPR033467 -
Aed1g2163 779 MobiDBLite consensus disorder prediction 735 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2163 Aed-Chr1 18075707 18080731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2163 10 779 CPP Transcription Factor Family AT3G22780 41.236 1.48e-152 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Aed1g2163 TCR 3.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2163 - - gmx:100811662 1297.72