Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2139 ATGCCCAGCCTGTTCTCGAAACACCTCCACCTCTGTTTCTTCAAGCTCAAATACCCCACCATTCTCTGCCACCACAACCATCACACCCCACCACCATCTTCCATCACCACCACCTCCGACTCCACCGACACCACCTCCACGGAGCCAGACTTCGCCTCCATCTTCGCCTCGCAGCGGTTCTTCTTCTCCTCACCGGGCACCTCGAACTCCATCGTGGAGTCCCCCGACACGCGCACCACTTCCGTGATCCCCGGTGGTGGCGGCGTCGGCGTCCCCAAGTATTCCCTCAACCCCTACGTCGATTTCCTCCGCTCAATGCAGGAAATGATCCGTTCACGCCAACAAGTTTTGGACATCACTAAAGATTCCGAATATCTCCACGAACTTCTCCTGTGCTACCTCGCTCTCAACCCCAAACACACCCACAAATACATCCTTCGCGCCTTCACCGACCTCGTCCTCCAACTCTTGTCCTCCTCCGCCCCGTCTCGGACGCACAAACACCGCCGCCACCGTAGTCTCTCCGGAAGGTTACTGTAA 540 0.5741 MPSLFSKHLHLCFFKLKYPTILCHHNHHTPPPSSITTTSDSTDTTSTEPDFASIFASQRFFFSSPGTSNSIVESPDTRTTSVIPGGGGVGVPKYSLNPYVDFLRSMQEMIRSRQQVLDITKDSEYLHELLLCYLALNPKHTHKYILRAFTDLVLQLLSSSAPSRTHKHRRHRSLSGRLL 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2139 179 Pfam Transcriptional repressor, ovate 95 156 IPR006458 -
Aed1g2139 179 ProSiteProfiles OVATE domain profile. 91 155 IPR006458 -
Aed1g2139 179 PANTHER TRANSCRIPTION REPRESSOR OFP12 34 167 - -
Aed1g2139 179 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 91 158 IPR006458 -
Aed1g2139 179 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 34 167 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2139 Aed-Chr1 17907250 17907789 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Aed1g2139 Ovate 3.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2139 - - gmx:102667886 239.965