Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2107 ATGGAGCTTCAGAGGCGCCAAGATCAGCGGAAGGGACAGAAGCGGAAGCTCGACGAGGAGCAGCACGAGGACCGGCAGATCTCGGCGGCGCCGCTCACCGCTGAGGAGCGAGCTGCACTCCTCTCCGACGTCTCCGAACAGGTGAGCATCCTCGAGTCGACTTTCACGTGGAACGAAGCGGACCGATCCGCGGCCAAGCGCGCCACTCACGCGCTCGCCGATCTCGCGAAGAATGAGGATGTGGTGAGCGTGATTGTTGAAGGAGGCGCGATTCCGGCGCTGGTCAAGCATCTTCAGGCGCCGCCTCTGAGTGACCGTGTCCAGAAGCCATTGCCGTTCGAGCACGAGGTTGAGAAAGGGAGCGCTTTCGCACTAGGACTTCTCGCCGTCAAGCCAGAACATCAGCAGTTCATTGTTGACAGTGGTGCCTTAACACATCTTGTTGATCTTTTGAAGAGGCACAGGAATGGCTTAACTTCTCGTGCTATTAATAGTCTCATTCGTAGGGCTGCAGATGCTATTACTAATCTTGCTCATGAGAACAGCAGCATTAAAACCTGTGTCAGGACGGAAGGTGGGATTCCACCACTTGTTCATTTGCTTGGTTTTGCTGATGCAAAGGTGCAAAGAGCAGCTGCTGGTGCTCTGCGAACCCTGGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCTCTTCCAACTTTGATTCTAATGCTACTTTCTGAAGATGCTGCTGTTCATTATGAAGCGGTTGGTGTGATTGGAAATTTAGTCCACTCTTCACCTAATATAAAGAAAGAAGTTCTTCTCGCTGGAGCTTTACAGCCAGTTATTGGATTACTTAGTTCCTGCTGTTCTGAAAGCCAGAGAGAAGCAGCCTTGTTACTTGGACAATTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTCCAACCTTTGATAGAGATGCTTCAGTCTCCTGATGTACAACTCAGGGAAATGTCTGCTTTTGCATTGGGGAGATTGGCCCAGGACCCACATAACCAGGCTGGTATTGCACACAATGGTGGCTTAGTGCCATTGCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCATTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTCATTAGGGTAGGTGGAGTTCAGAGACTGCAGGATGGAGAATTTATTGTTCAAGCAACTAAAGATTGTGTTGCCAAAACGTTGAAAAGATTAGAGGAGAAGATTCATGGTCGTGTGCTGAACCATTTGTTATATCTCATGCGAGTTTCAGAAAAGGGTTGTCAAAGACGAGTTGCTTTGGCTCTTGCGCATCTTTGCTCTTCAGATGATCAGAGAATAATTTTTATCGATCACTATGGTATGGATCTTCTTGCTAAAATGTTTGTCTATTTAGGAGAGCAATATGTGAACAATGCTACATTGTCTGACGTTACATTTTTGGTTGAAGGCAAACGATTTTATGCTCATAGAATTTGTCTACTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTACAGGGAGAAGGAGGCAAGGGACATAGAGATTCCAAATATTAGATGGGAGGTTTTTGAGTTGATGATGAGATTTGTATATTGTGGATCAGTTGATGTCACTCTGGATATTGCTCAAGATCTTCTTCGAGCAGCCGATCAATATCTTTTGGAAGGACTTAAGAGACTCTGTGAGTACACAATCGCACAGGATATATTGCTAGAGAATGTGTCAAGTATGTATGAACTTTCAGAAGCCTTCAATGCAATATCATTGAGGCATGCATGCATCCTTTTTATCTTGGAGCAATTTGATAAATTGAGTGCAAGGCCAGGGCACTCTCTTCTGATTCAGCGCATAATACCAGAGATCCGCAATTACTTTGTTAAAGCTCTTACAAAGGCCAACTCTCATAATAACCGACTGTAG 1995 0.4521 MELQRRQDQRKGQKRKLDEEQHEDRQISAAPLTAEERAALLSDVSEQVSILESTFTWNEADRSAAKRATHALADLAKNEDVVSVIVEGGAIPALVKHLQAPPLSDRVQKPLPFEHEVEKGSAFALGLLAVKPEHQQFIVDSGALTHLVDLLKRHRNGLTSRAINSLIRRAADAITNLAHENSSIKTCVRTEGGIPPLVHLLGFADAKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLLSEDAAVHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQSPDVQLREMSAFALGRLAQDPHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKGCQRRVALALAHLCSSDDQRIIFIDHYGMDLLAKMFVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFVYCGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDILLENVSSMYELSEAFNAISLRHACILFILEQFDKLSARPGHSLLIQRIIPEIRNYFVKALTKANSHNNRL 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2107 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 318 360 IPR000225 GO:0005515
Aed1g2107 664 MobiDBLite consensus disorder prediction 1 30 - -
Aed1g2107 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 359 401 IPR000225 GO:0005515
Aed1g2107 664 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 483 IPR044282 -
Aed1g2107 664 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 484 660 IPR044282 -
Aed1g2107 664 ProSiteProfiles BTB domain profile. 497 564 IPR000210 GO:0005515
Aed1g2107 664 CDD BTB_POZ_ARIA_plant 484 599 - -
Aed1g2107 664 Gene3D - 267 491 IPR011989 -
Aed1g2107 664 SUPERFAMILY POZ domain 488 591 IPR011333 -
Aed1g2107 664 Pfam BTB/POZ domain 490 592 IPR000210 GO:0005515
Aed1g2107 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 234 276 IPR000225 GO:0005515
Aed1g2107 664 SMART arm_5 181 221 IPR000225 GO:0005515
Aed1g2107 664 SMART arm_5 307 347 IPR000225 GO:0005515
Aed1g2107 664 SMART arm_5 78 130 IPR000225 GO:0005515
Aed1g2107 664 SMART arm_5 131 179 IPR000225 GO:0005515
Aed1g2107 664 SMART arm_5 223 263 IPR000225 GO:0005515
Aed1g2107 664 SMART arm_5 348 388 IPR000225 GO:0005515
Aed1g2107 664 SMART arm_5 265 305 IPR000225 GO:0005515
Aed1g2107 664 Coils Coil 3 23 - -
Aed1g2107 664 MobiDBLite consensus disorder prediction 1 31 - -
Aed1g2107 664 Pfam Armadillo/beta-catenin-like repeat 307 346 IPR000225 GO:0005515
Aed1g2107 664 Pfam Armadillo/beta-catenin-like repeat 185 220 IPR000225 GO:0005515
Aed1g2107 664 Pfam Armadillo/beta-catenin-like repeat 223 262 IPR000225 GO:0005515
Aed1g2107 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 142 192 IPR000225 GO:0005515
Aed1g2107 664 Gene3D Potassium Channel Kv1.1; Chain A 492 632 IPR011333 -
Aed1g2107 664 SUPERFAMILY ARM repeat 49 406 IPR016024 -
Aed1g2107 664 Gene3D - 163 266 IPR011989 -
Aed1g2107 664 SMART BTB_4 497 594 IPR000210 GO:0005515
Aed1g2107 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 192 227 IPR000225 GO:0005515
Aed1g2107 664 Gene3D - 38 162 IPR011989 -
Aed1g2107 664 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 483 - -
Aed1g2107 664 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 484 660 - -
Aed1g2107 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 89 143 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2107 Aed-Chr1 17674283 17682023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2107 197 476 U-box Gene Family AT3G46510 25.357 1.59e-13 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Aed1g2107 BTB 6.1e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2107 - - gmx:100784348 1206.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1907 11 21941305 21948676 Aed1g2107 1 17674283 17682023 PCT