Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2103 ATGGAGTTCCCAAAACCCTCTTCATCGAAGGTCCTAGGAATGGGGAAGAAGAACAAGAAGCATGCCGAGGTGGTGGAACCAGAACTCAACGCCAACAATGGCGGCGAAATCGATGATTCTCCCAATAAGAAGAAGAAACATAAGAAAAAGAATAAGAAGAACAAAATACCCACAGTTACCTTAGCCGTGCCTGCTTCCATCATCGACAACGTTCCAACTCTCGAGCTGGCTACCCGGGTTTCAATTCAATACCCATTTTCTCATTCCCTCTTCATTCTCAGTATTCCCTTCTTCTTTTTAATATTATTCCCCCCTTTTCAGTTGGCTGGTCAAATCGCTCGCGCCGCAACTATTTTCCGTATCAACGAGGTGGTTGTGTTTGACAATAAAAGTAACCCAGATAATGATTCCATGCTGGATAATTCGGATGATGAAAGTTGTGCTGCTTTTCTGGTGCGAATCCTGCAGTACCTTGAGACACCTCAGTATTTGAGGAAGGCTCTCTTTCCAATGCATAACAGCCTAAGATTTGTGGGCCTGCTGCCACCCCTTGATGCTCCACACCATTTGCGCAAACACGAATGGGGTCTGTATCGTGAAGGTGTCACAGTAAAAGAAAGAGACTCAAACTCTGGCGCAACACTAGTTGATGTTGGGTTAGTGAAGAATGTTATAGTTGATCAAGTATTTGAACCAGGAAGAAGAGTTACTATTGCCATGGGTACCAACCGCAATTTGGATTCTGATTTGCCACGCCAGGTCGTCTCATCATCTAAGCCTAGGGAAGAAGGAACATATTGGGGATATCAAGTGCGTTATGCACATAATATTAGCTCAGTATTTAAGGATTGTGCATACAAGGGTGGCTATGATTTTATAATTGGTACCTCTGAGCATGGTCAGATTATTAAGTCATCTGATCTTGAAATACCTTCTTTCAGACATTTATTGATTGCCTTCGGTGGACTGGCTGGGTTGGAAGAGAGTATTGAAGAAGATGATAACTTAAAGGCTCTTCTTTCAATGAGATGCTTGTCTTTCTTAGGGAAAAAAGGCACAGGATGCATTCGACTTATATTTAAATACATGTCCACATCAGGGGAGCCGAACAATTCGAACAGAGGAAGCTATTCTCATCTCTCTTCAATACTTCCAAGAACCAATCAGCCGAGCAATGCAGGGTTGAATATTGTTAATAAGGGACCGTTGGGGCTCGCTCGCGCCATGGAGAAGGAGAAGGAGAAGGAGAACGAGCATGACGCAAAGACACTCATCTGTGCCCTCAACCTTCTCTCGCGCGACCTACCTCTCCCTCCTCACATCCTCAACTCCGTTTCTTCCATCTACCGCAACAACAACCATGGCGATGGAGGGAATTCTGGAGAGGATTTGATAACGGATCTTGAAGATGCACTGTCCAAGCAGCGTCCGAGTTGTGTGTCTGGTTTCAAATTGGAGAAAGCAAGGGATAATCGGTATAGGAGTCAGATTCAGCATAGGTTAAATGAGCTTGAAGAATTGCCTTCAAGCAGGGGAGACGACCTGCAGACAAAGTGCTTGCTTGAACTTTATGGATTAAAGCTGGCAGAGTTGCAGATGAGGGTTCGGTCTGATGTGAGTTCTGAATACTGGCTCAATGCTAAGTGTGCATATCCTGACAGGCAATTGTTTGATTGGGGCATGATGAGGTTGCGACGTCCATTGTATGGTGTTGGAGATCCATTTGCCATGGATGCTGATGATCAATTAAGGAAGAAACGGGAGGCTGAGAGACTGTCAAGATTAGAAGAAAAGGAGAAGAGTCATATAGAGACTAGAACAAGGAAATTTTTTGCAGAAATACTCAATACTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTGTGAAGAGGAGAAAACAGAGGAATGATGCTGTCCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACTCGGGCAGAGAAATTGAGATTCCAAGCCTTGAAGGCTGATGATCAAGAAGCCTACATGAGAATGGTGAAAGAGAGCAAGAATGAGAGATTAACTTTGCTTCTTGAAGAAACAAATAAGCTACTAGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAGGACAACAAATATTCAAATGGTATTGAACCACCCTTGGAGGATTCTGAAGCTGATTTACTGGAGTCAGATGCTTCAAAGAATGGAGTTTCTAAGGAATCACCTCTTGATGAAGATATAGATATGATAGATTCTGATCACAATGGTGATTCTAGTGATTTACTTGAAGGTCAGCGGCAATACAACTCTGCCATTCATTCAATTCAAGAAAAGGTAACTGAGCAACCATCTATGCTTCAAGGTGGAGAACTAAGACCATACCAGATAGAGGGGCTCCAATGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAGACAATACAAACAATTTCGCTGGTAGCACATCTTATGGAATACAAGGGTGTTACTGGTCCCCACTTGATTGTTGCTCCAAAGGCTGTTCTGCCAAATTGGGTCAGTGAATTCACAACATGGGCTCCCAGCATCACAGCTATTCTTTATGATGGGCGGTTGGATGAGAGGAAAGCGATGAAGGAAGAGTTGTCAGGGGAGGGGAAATTTAATGTTCTATTAACGCACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCATTGGCAATACTTAATTGTGGATGAAGGGCATCGGTTGAAAAATCATGAGTCTGCTCTGGCAAGAACCTTGGACAATGGTTATCACATCAAACGAAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAGTTGTGGTCTTTGCTTAATTTTCTCCTCCCAGGCATTTTTAACTCAGTTCAGAATTTTGAGGACTGGTTTAACGCCCCCTTTGCAGACCGGGTTGATGTCTCTCTCACAGATGAGGAACAACTATTGATCATCCGGCGTCTGCATCAGGTAATAAGGCCCTTCATATTAAGAAGGAAAAAAGATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGACATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTTACTGATGTAGGCAGAGTTGGGTTGGACAATGGTTCTGGAAAATCAAAAAGTCTACAAAACTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTCTTCGTGTTAGATTATGACATGTATAGACGTAAGGAGGAGATTGTCAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACAGAGTCCTCCTTTTCTCACAAATGACTCGACTTATGGACACTCTCGAAGTCTATTTGCGACTTCATGATTTTAAGTATCTTAGACTTGATGGTTCAACTAAAACTGAGGAAAGAGGCAATCTTCTACGTAAATTTAATGCTCCTGACTCCCCATACTTCATGTTTCTTTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAATTTACAAACAGCAGATACTGTTATAATCTTTGATAGTGATTGGAACCCACAAATGGATCAACAAGCCGAGGACCGAGCACATCGCATTGGACAAAAAAAGGAAGTCAGGGTTTTTGTGTTGGTTAGTGTAGGATCAATTGAAGAGGTGATTTTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAAGTCATCCAGGCAGGACTTTTCAACACAACTTCAACAGCCCAGGACAGAAGAGAAATGTTAGAAGAGATTATGCGTAGAGGTTCAAGCTCACTTGGGACAGATGTGCCTAGTGAGAGAGAAATTAACCGCCTTGCTGCTCGATCAGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAGAGAAGACAAAAGGAAAATTACAGATCTCGTCTCATGGAAGAGCATGAATTGCCAGATTGGGTGTATTCTCCAATGAACAAGGATGATAAGTCCAAAGATTTCAACAGTGGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACATTAAGTGATCTGCAATGGATGAAGGCTGTGGAGAATGGGGTAGACATATCAAAGTTTTCAGGTAAGGGAAAAAGAAGAGACCACCACTCATCTGACAGCATTCCACAAGCCAGTGATAATACAGGAGCTGAAGAAAGTTTAGAGTTGAGGATTGAAAGTGTTCCCATCGAAAATGAGCGAACAAGTGAAGATAGTTTCCATGTGACCCCTCCCACAAAGAGATTCAAGCCTGAAGGAACAAATTTCCTGAAACATACACAGGAGGATGTTGGAAGTGGTTTGAATTTGTTATCATGGAATACTCACAAAAAGAAAAGGTCAAGCTTTCTTGGCCAAGGTTCATTATCTGATACTAGAGGGCATTCCTCAAATGGAAGATCAAACTGGAATTGA 4461 0.4239 MEFPKPSSSKVLGMGKKNKKHAEVVEPELNANNGGEIDDSPNKKKKHKKKNKKNKIPTVTLAVPASIIDNVPTLELATRVSIQYPFSHSLFILSIPFFFLILFPPFQLAGQIARAATIFRINEVVVFDNKSNPDNDSMLDNSDDESCAAFLVRILQYLETPQYLRKALFPMHNSLRFVGLLPPLDAPHHLRKHEWGLYREGVTVKERDSNSGATLVDVGLVKNVIVDQVFEPGRRVTIAMGTNRNLDSDLPRQVVSSSKPREEGTYWGYQVRYAHNISSVFKDCAYKGGYDFIIGTSEHGQIIKSSDLEIPSFRHLLIAFGGLAGLEESIEEDDNLKALLSMRCLSFLGKKGTGCIRLIFKYMSTSGEPNNSNRGSYSHLSSILPRTNQPSNAGLNIVNKGPLGLARAMEKEKEKENEHDAKTLICALNLLSRDLPLPPHILNSVSSIYRNNNHGDGGNSGEDLITDLEDALSKQRPSCVSGFKLEKARDNRYRSQIQHRLNELEELPSSRGDDLQTKCLLELYGLKLAELQMRVRSDVSSEYWLNAKCAYPDRQLFDWGMMRLRRPLYGVGDPFAMDADDQLRKKREAERLSRLEEKEKSHIETRTRKFFAEILNTVREFQLQIQASVKRRKQRNDAVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDNKYSNGIEPPLEDSEADLLESDASKNGVSKESPLDEDIDMIDSDHNGDSSDLLEGQRQYNSAIHSIQEKVTEQPSMLQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLVAHLMEYKGVTGPHLIVAPKAVLPNWVSEFTTWAPSITAILYDGRLDERKAMKEELSGEGKFNVLLTHYDLIMRDKAFLKKIHWQYLIVDEGHRLKNHESALARTLDNGYHIKRRLLLTGTPIQNSLQELWSLLNFLLPGIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVLDYDMYRRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDTLEVYLRLHDFKYLRLDGSTKTEERGNLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPMNKDDKSKDFNSGVTGKRKRKEVVYADTLSDLQWMKAVENGVDISKFSGKGKRRDHHSSDSIPQASDNTGAEESLELRIESVPIENERTSEDSFHVTPPTKRFKPEGTNFLKHTQEDVGSGLNLLSWNTHKKKRSSFLGQGSLSDTRGHSSNGRSNWN 1486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2103 1486 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 798 964 IPR014001 -
Aed1g2103 1486 Pfam Helicase conserved C-terminal domain 1097 1210 IPR001650 -
Aed1g2103 1486 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1100 1267 IPR001650 -
Aed1g2103 1486 Coils Coil 1301 1321 - -
Aed1g2103 1486 SMART SnAC_2 1303 1363 IPR029295 GO:0042393
Aed1g2103 1486 Pfam Snf2-ATP coupling, chromatin remodelling complex 1304 1363 IPR029295 GO:0042393
Aed1g2103 1486 Pfam Putative RNA methyltransferase 108 337 IPR003750 -
Aed1g2103 1486 SMART ultradead3 782 975 IPR014001 -
Aed1g2103 1486 MobiDBLite consensus disorder prediction 733 755 - -
Aed1g2103 1486 Gene3D - 193 258 IPR012340 -
Aed1g2103 1486 PANTHER SNF2/RAD54 HELICASE FAMILY 415 1411 - -
Aed1g2103 1486 CDD HsC9orf114-like 58 358 IPR003750 -
Aed1g2103 1486 MobiDBLite consensus disorder prediction 1374 1435 - -
Aed1g2103 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1013 1264 IPR027417 -
Aed1g2103 1486 Gene3D - 108 357 IPR029026 -
Aed1g2103 1486 MobiDBLite consensus disorder prediction 1406 1427 - -
Aed1g2103 1486 SUPERFAMILY Nucleic acid-binding proteins 187 268 IPR012340 -
Aed1g2103 1486 Gene3D - 1017 1317 IPR027417 -
Aed1g2103 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 762 1011 IPR027417 -
Aed1g2103 1486 MobiDBLite consensus disorder prediction 1374 1389 - -
Aed1g2103 1486 Pfam SNF2-related domain 789 1077 IPR000330 GO:0005524|GO:0140658
Aed1g2103 1486 MobiDBLite consensus disorder prediction 1 55 - -
Aed1g2103 1486 MobiDBLite consensus disorder prediction 1463 1486 - -
Aed1g2103 1486 Gene3D - 756 1010 IPR038718 -
Aed1g2103 1486 CDD SF2_C_SNF 1088 1221 - -
Aed1g2103 1486 SUPERFAMILY alpha/beta knot 108 325 IPR029028 -
Aed1g2103 1486 SMART helicmild6 1126 1210 IPR001650 -
Aed1g2103 1486 PANTHER ATP-DEPENDENT HELICASE BRM 415 1411 - -
Aed1g2103 1486 MobiDBLite consensus disorder prediction 726 757 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2103 Aed-Chr1 17643830 17657487 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2103 1093 1238 RAD5 or RAD16-like Gene Family AT5G43530 36.667 9.63e-21 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed1g2103 SNF2_N 3.7e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2103 - - gmx:100786280 2043.85