Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2097 ATGTTCTCCCAAAACGTGATTCTCCCTCCTGAAAACCCTAGACCCGCGGCGTTCGCTTCCAAACCCATGAGCAATGAGATCGCAAAGCCTCCGCCGTCGATTCTCGTTGGCCGCTTCAAGGCTCTCCTCAAGCAGCGCGACGACGAACTCAGAGTCGCCGCCGGCGTCCCCGTCCCGCCGCCTTCCACCGACGAAATCGTCCAGATTTACGAACTCCTCTTGTCGGAACTCACGTGCAATTTGAAACCCATCATCACCGATCTCACTATTATTGCAGAACAGCAGAGGGAGCACGCCAGAGGCATCGCTGACTCTATTTGCGCTCGGATTCTCGAGGTGCAAGCAGATCAAAAGCTTCCTTCACTTTATCTGTTGGACAGTATTGTGAAGAATTTTGGGCAGGAATACATTAGATACTTCTCATTGCGTCTTCCTGAAGTTTTCTGTGAGGCATACAGGCATGTTCAGCCTAGTATGCATTCTGCTATGCGCCATCTTTTTGGTACTTGGTCAAAAGTCTTTCCACTTTCAGTCCTGCGTAAGATTGAAGCTGAGTTGCAATTTTCTCAAGCAGTTAATACTCAATCATCCACCCTGAATCCTGTCAGGGCTGCTGAATCATCTCGACCAAGTCATGGCATACATGTTAATCCGAAATACTTGCGGCAGTTGGAGCGCTCAACTGTGGATAGTGTTGGTGAAAATTTGGATTCATCAGGAAATGCTGGTAATACAAATTTTGGCTTTGCAGCTAGTAAGACACATCAATTTTTATCAAGCAGTAGCAGGCTTGGAATATCCTCGTTGTCCCCTTCAAGAATTGGAGCATCTATAGATGAATATGCAGTGGACAATTCTGCTGTCAGGTTAATTGAGAAAGACTCTCCTCATCCTGCTGTTGATTATGGTGTTGCCAAAGCATTAGGTAGAGATGTGGATTTGACTGACTGGCAGCGAAAGCAGTATTCTGGTGATGGTCGTAGTCGATTTCCAACTTCTATTACATACAGCCTTAGTAATGGACATCAGCGTCAAAGTCCAAGAGCTTTAATTGATGCATATGGCAGTGACAAAAGCCAAGAAACTTCAAGCAGTAAGCCTTTGTTAGTTGACCGTCTGGATAGAAATGGTATAGACAAAGTGTTGTCAACATCATGGCAGAATACTGAAGAGGAGGAGTTTGACTGGGAAAATATGAGTCCGACCTTAATCGACCATAGTAGGAATAACAGTTTATTGCCTTCAACTATTGGTTTCTCTAGGGAACGGCCTGTTGTTGCAGAGCAAGATACCAGGAAGGGGTGGTCTAGTGGATCTCATCTTCCTCCAGTAGATGATTCTTCTGCCATAGCAGAAGATGCATTTGCCTCTTCAACTTTTCGTCGCGCATCCCCAGGTCAGGTACCTGGATCCCAAAATCAAATCAATCATAGCCTGGGCTCCTCTCAACTGCATGATGCTTGGAAGATTTCTCATCATCCGTCTAACATTTTTAGTAATAGGGGGCAAGCAAGGAATCTTATGATTCCTCCCATTGACAACATTCGCAATATAGATAATAACCCATATTGGGTTCGACCTGCAGTGTCAAGGATGGAAGCTCGCTCATCAGTTTTGTCAGCACCTTTTGAAATGAGGCCTTCTGTAAATGTGAATGTCACTCGACCACCCATCATAAATCCAATAAATCCGCTGCAAAAACATGTTAGGAATCAGTTTGATGCAATAAAGACTAGTAATCCTATTGTGAACCATGTAAATAAATCTTCATTTATGCCAGAACAGTCATTTGACAGTGTTGAGAACAAGGATGCAGGTATTTCAAAGATACATCAGTTGCGTAATCAGCTTCCTGGGGTACCACAACTACAGTTTTTTCCATCTCAGGATCCATCAACTTCACAATTTAGTCATGCGAGTTCATTGCAGAGACATGGTGCTTCTATAAGTACAGCCATGCCAAATCCATTACCAGTTATACCATTCCCTTTACCAGTTGCAAATAACCCTTTACATTTACATGGTGGAGCCCATCCACCTTTACCTCCAGGTCGCCCTCCTGCTCCATCTCAAATGATACCTCATCCAAATGCTGGTGCATTTATGTCAAGCCAACAGCCAACTGTTGGATATACTAATTTAATTAGTTCTCTAATGTCTCAAGGTGTGATCTCATTGGCTAACCAGCTGCCTGCACAGGACTCTGTTGGAACTGAGTTTAATCCAGATATTCTTAAGGTCCGTCATGAGTCTGCTATCAATGCCTTATATGGTGATCTCCCTAGACAATGCACAACTTGTGGGCTCCGATTCAAATGCCAAGAGGAACACAGTAGTCATATGGATTGGCATGTGACTAAGAATCGGATGTCTAAAAGCCGTAAGCAGAAACCCTCTCGCAAGTGGTTTGTTAGTGAGAGCATGTGGCTCAGTGGTGCAGAGGCATTGGGAACAGAATCAGTTCCAGGTTTCTTGCCAACAGAAACCATAGAAGAAGGGAAAGATAATGAAGAGTTGGCAGAGGGTGCCAATGAAGAGGGTACCCAAAGGAAACGAATGCGGAGTTGA 2568 0.4447 MFSQNVILPPENPRPAAFASKPMSNEIAKPPPSILVGRFKALLKQRDDELRVAAGVPVPPPSTDEIVQIYELLLSELTCNLKPIITDLTIIAEQQREHARGIADSICARILEVQADQKLPSLYLLDSIVKNFGQEYIRYFSLRLPEVFCEAYRHVQPSMHSAMRHLFGTWSKVFPLSVLRKIEAELQFSQAVNTQSSTLNPVRAAESSRPSHGIHVNPKYLRQLERSTVDSVGENLDSSGNAGNTNFGFAASKTHQFLSSSSRLGISSLSPSRIGASIDEYAVDNSAVRLIEKDSPHPAVDYGVAKALGRDVDLTDWQRKQYSGDGRSRFPTSITYSLSNGHQRQSPRALIDAYGSDKSQETSSSKPLLVDRLDRNGIDKVLSTSWQNTEEEEFDWENMSPTLIDHSRNNSLLPSTIGFSRERPVVAEQDTRKGWSSGSHLPPVDDSSAIAEDAFASSTFRRASPGQVPGSQNQINHSLGSSQLHDAWKISHHPSNIFSNRGQARNLMIPPIDNIRNIDNNPYWVRPAVSRMEARSSVLSAPFEMRPSVNVNVTRPPIINPINPLQKHVRNQFDAIKTSNPIVNHVNKSSFMPEQSFDSVENKDAGISKIHQLRNQLPGVPQLQFFPSQDPSTSQFSHASSLQRHGASISTAMPNPLPVIPFPLPVANNPLHLHGGAHPPLPPGRPPAPSQMIPHPNAGAFMSSQQPTVGYTNLISSLMSQGVISLANQLPAQDSVGTEFNPDILKVRHESAINALYGDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKSRKQKPSRKWFVSESMWLSGAEALGTESVPGFLPTETIEEGKDNEELAEGANEEGTQRKRMRS 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2097 855 MobiDBLite consensus disorder prediction 1 25 - -
Aed1g2097 855 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 29 846 - -
Aed1g2097 855 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 29 846 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Aed1g2097 855 MobiDBLite consensus disorder prediction 325 346 - -
Aed1g2097 855 SUPERFAMILY ENTH/VHS domain 61 187 IPR008942 -
Aed1g2097 855 Gene3D - 60 188 IPR008942 -
Aed1g2097 855 MobiDBLite consensus disorder prediction 830 855 - -
Aed1g2097 855 ProSiteProfiles CID domain profile. 62 190 IPR006569 -
Aed1g2097 855 MobiDBLite consensus disorder prediction 322 348 - -
Aed1g2097 855 ProSitePatterns Zinc finger C2H2 type domain signature. 764 784 IPR013087 -
Aed1g2097 855 Pfam CID domain 81 176 IPR006569 -
Aed1g2097 855 CDD CID_Pcf11 70 187 - -
Aed1g2097 855 MobiDBLite consensus disorder prediction 819 855 - -
Aed1g2097 855 SMART 558neu5 65 187 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2097 Aed-Chr1 17598448 17606935 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2097 703 848 C2H2 Transcription Factor Family AT4G04885 69.863 1.04e-60 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2097 K14400 - gmx:100794796 1446.41