Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2096 ATGAATGCTAACAAAACAAACTTCGGCAGTAGCAGGCTTGGAATGTTACCGTTGCCTTCAGGAATTGAACTTGATAGGCCTTTGTCTGCATCTATGGATGAATATGCAGTTGACAGTTCCGTTGAATGGCAACGAAAACGAAAGCAGTATTCCGGTGATGGTGGTAATCGATTTCCAGCTTCTATCACACACAGACACAGCCTTAGCAATGGACACCAGAATCAAAGTCCAAGGGCTTTAATTAATGCATATAGCAGTGCAAAAGGCAACAAACTTCATGGCAGAATACTGAAGAGGAGGAGTTTAATTGGGAAGATCTATGTCCCAGGGAAAGACCTGCTGCTGTTGTTGTTGCAGCTAATTAGAGATCTTGATAGTGCACCACTGGGTCATGTACCTAAATTCCAAAATCAAACCAATCATGGTGCTTGGAAGATTTCTCATCATCCATCACAACATATGTTTAGTAATATGGGGCGAGCAAGGAGTCTTGCAATCCCTCCTATTGATAACATTCGCAATACAGATATAAATGTGACTCAACCTCCTACCTTGAATCCGATAACTCCATTGCGAAAACGTGTTAGGTGTCAGTTTGAAGCAGCAACACATACTAGTAATCCTACTGTGAACAAGGATGCAAGTGTTTCAATGATACCCCAAGTGCAGATTTTTCCATCTCAGGATCGATCACCACCCTCACAATTTAGCCATGCAAGCGTGATCTCATTATCTAATCAGCCATCTGCACAGGATTCTGTTGGAACTGAGTTCAATCCAAATATGCTGAAGGTTCGTCATGAGTCTGTAGTGAAGGCCTTGTATAATGATCTTCCTAGACAATGCAAAACTTGTGGATGCCGATTCAGAAGCAAAGAGGAACACAGTAGTCACATGGATTGGCATGTGACTAAGAATCGGATGTCTAAGACTAAAAGCCGTAAGCAGAAGCCATCTCGTGAGTGGTTTGTGAATGTGAAGCTGTGGCATAGTGGTGCAGAGGCATTGGGAACAAAATCAGTTCCAGGTTTTTTGGCAACAGAAACCATAGATTATGAAGAAAAGAAAGATCATGAAGAGGTTGCAGTGCCAGCAGAAGAAGACCAGAAAACATGTGCATTTATCTCATCGACCAACGGTTGCTGCATTCTGCAGCCTGCAGCCTGCAGCAGAAAAGAAGAAATACAATTCCCGAAGAAGGAAGGAGAAGCTGCAGCTGCAAGCCAGTAA 1230 0.4293 MNANKTNFGSSRLGMLPLPSGIELDRPLSASMDEYAVDSSVEWQRKRKQYSGDGGNRFPASITHRHSLSNGHQNQSPRALINAYSSAKGNKLHGRILKRRSLIGKIYVPGKDLLLLLLQLIRDLDSAPLGHVPKFQNQTNHGAWKISHHPSQHMFSNMGRARSLAIPPIDNIRNTDINVTQPPTLNPITPLRKRVRCQFEAATHTSNPTVNKDASVSMIPQVQIFPSQDRSPPSQFSHASVISLSNQPSAQDSVGTEFNPNMLKVRHESVVKALYNDLPRQCKTCGCRFRSKEEHSSHMDWHVTKNRMSKTKSRKQKPSREWFVNVKLWHSGAEALGTKSVPGFLATETIDYEEKKDHEEVAVPAEEDQKTCAFISSTNGCCILQPAACSRKEEIQFPKKEGEAAAASQ 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2096 409 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 65 374 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Aed1g2096 409 ProSitePatterns Zinc finger C2H2 type domain signature. 282 302 IPR013087 -
Aed1g2096 409 MobiDBLite consensus disorder prediction 48 76 - -
Aed1g2096 409 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 65 374 - -
Aed1g2096 409 MobiDBLite consensus disorder prediction 62 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2096 Aed-Chr1 17591455 17596434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2096 241 374 C2H2 Transcription Factor Family AT4G04885 62.687 9.89e-52 183