Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2084 ATGCAATTCCCTCTACCAGTTGGATATACTAACTTACTTAGTTCTCTGATTTCTCAAGGCGTGATCTCATTGTCTAATCAGCCATCTGCACAGGATTCTGTTGGAACTGAGTTCAATCCAGATATGCTGAACGTTCGTAACGAGTCTGTAGTGAAGATCTTGTATAGTGATCTTCCTATACAATGCAAAACTTGTGGATCCCGATTCAGAAGCAAAGAGGAACACAGTAGTCACATGGATTGGCATGTGACTAAGAATCAGAAGTCTGAGAAGCCATCTCGCGAGTGGTTTGTGGGTGGACTTGATGAAAAGGAGGGTGCCAATGAAGAGGATAGCCAAAGGAAATGA 348 0.4282 MQFPLPVGYTNLLSSLISQGVISLSNQPSAQDSVGTEFNPDMLNVRNESVVKILYSDLPIQCKTCGSRFRSKEEHSSHMDWHVTKNQKSEKPSREWFVGGLDEKEGANEEDSQRK 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2084 115 MobiDBLite consensus disorder prediction 73 115 - -
Aed1g2084 115 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 8 100 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Aed1g2084 115 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 8 100 - -
Aed1g2084 115 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Aed1g2084 115 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2084 Aed-Chr1 17520173 17520804 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2084 8 98 C2H2 Transcription Factor Family AT4G04885 56.842 6.64e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed1g2084 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2084 K14400 - gmx:100794796 144.821