Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2060 ATGAGCAATATTGATGTAGGTAATGAAGTTGTCGGGGAGCTTCTGAGAAGTCTAGGAAACAGAGCTGCTGCCGGTGATTCCCACCGTAAGTATTCTCAAGCAAACAAAACAGGTCCAAGCTTTCAAACCGTATTTGCTCATGTGCAGTGCACACCGGATTTGTCAGAGTTGCAATGCAATCAGTGCGTGTCTCGATTAATATCGTATATCCCAAACTGCTGTGCTGGAAAAGTACGTACCAGACTTTTTACACCGAGTTGTAATCTTAGATTTGACACCACCCCATACTTTGATCCTATTCCTACGCCTCCATCGCAGACACCGCAAGCATTTCCTTCTCCTCCTCCATCCATCGATGCCACCTTCATAAAAGGTAAGAGCGACTCATGGAAAACTGTCATTGCCATAATTGTGCCAATTGTCTCCGTTGTGATACTCGTCACCTTTACGTGCTTCTTTTTAAGAGGAAGGAAGCCAACCAAGTATTTTAAAAGTAATGGATATATGACACCAGAATATGCAAAGCATGGACATTTCTCAGTGAAGTCAGATGTTTTTAGTTTTGGTGTAATAGTTCTTGAGATAGTGACTGGACACAAAAACAACGATATTCGTGACAACGGTTATGTAGAACATCTAATAAGCTTTGTAAGACTTTAA 660 0.4152 MSNIDVGNEVVGELLRSLGNRAAAGDSHRKYSQANKTGPSFQTVFAHVQCTPDLSELQCNQCVSRLISYIPNCCAGKVRTRLFTPSCNLRFDTTPYFDPIPTPPSQTPQAFPSPPPSIDATFIKGKSDSWKTVIAIIVPIVSVVILVTFTCFFLRGRKPTKYFKSNGYMTPEYAKHGHFSVKSDVFSFGVIVLEIVTGHKNNDIRDNGYVEHLISFVRL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2060 219 Pfam Salt stress response/antifungal 11 93 IPR002902 -
Aed1g2060 219 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 166 217 - -
Aed1g2060 219 Pfam Protein tyrosine and serine/threonine kinase 167 200 IPR001245 GO:0004672|GO:0006468
Aed1g2060 219 SUPERFAMILY Protein kinase-like (PK-like) 155 202 IPR011009 -
Aed1g2060 219 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 4 163 - -
Aed1g2060 219 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 4 163 - -
Aed1g2060 219 Gene3D - 1 96 IPR038408 -
Aed1g2060 219 Gene3D Transferase(Phosphotransferase) domain 1 145 218 - -
Aed1g2060 219 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 166 217 - -
Aed1g2060 219 ProSiteProfiles Gnk2-homologous domain profile. 1 96 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2060 Aed-Chr1 17298763 17303797 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2060 152 217 Receptor kinase-like Gene Family AT4G21410 52.055 1.04e-14 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aed1g2060 Stress-antifung 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2060 - - gmx:100782266 258.84