Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2051 ATGGGTCGAAAAAAGATTGAGATAAAGAAGCTTGACAAGGCCAGCAACAAGCAAGTAGCGTTCTCAAAAAGAAGAAGGGGACTGTTCAAAAAAGCCAGTGAACTCTGCATTTTATGCAACGTTTACGTTGCCATAGTTGTGTTTTCTCCTGCTGACAAATTGTTCTGCTTTGGCCACCCAGACATCGACAGCATAATCAGTCGCTATCTCAAAGGAGCCACAGAATTTGAACCTGCAAAGTCAAAAGGAAAATCAAAATCAGTATCATTTGAGGAGCGTAACAGGGAATACGAAGAGGCGATGAAGAAGTTGGAGTTGGAAAAGCAGAACTTGGCACAAACTGAAATATTGACCAAGAGTTGTTGGAACAGAAGGTGGTGGGACGACCTCATTGATCAGATGAGTGATCATCACTTGGAGCAGTTTATGGTTTCCATTTATGAATTAAGGAAAAAACTTGCAGAAAGTACTGGTAAATTGATGCTGCTTGGGGTCATGAATATGTAG 507 0.4122 MGRKKIEIKKLDKASNKQVAFSKRRRGLFKKASELCILCNVYVAIVVFSPADKLFCFGHPDIDSIISRYLKGATEFEPAKSKGKSKSVSFEERNREYEEAMKKLELEKQNLAQTEILTKSCWNRRWWDDLIDQMSDHHLEQFMVSIYELRKKLAESTGKLMLLGVMNM 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2051 168 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aed1g2051 168 PANTHER MADS BOX PROTEIN 2 162 - -
Aed1g2051 168 Coils Coil 87 117 - -
Aed1g2051 168 Gene3D - 14 115 IPR036879 GO:0003677|GO:0046983
Aed1g2051 168 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 2 162 - -
Aed1g2051 168 SUPERFAMILY SRF-like 1 71 IPR036879 GO:0003677|GO:0046983
Aed1g2051 168 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aed1g2051 168 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Aed1g2051 168 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aed1g2051 168 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aed1g2051 168 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aed1g2051 168 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2051 Aed-Chr1 17233256 17233762 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2051 2 168 Type I MADS-box Gene Family AT5G60440 36.571 3.40e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aed1g2051 SRF-TF 1.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2051 - - gmx:100814979 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2051 1 17233256 17233762 Aed1g2051 1 17233256 17233762 ECH