Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2050 ATGGATATGTTTAAGCAGAAAAAGAAAAACACAGGCCGCAAAAAGATTGAGATCAAGAAGCTTGACAAGGCTAGCAACAAGCAAGTAACGTTCTCAAAGAGAAGAACAGGACTGTTCAAAAAAGCCAGTGAACTATGCATTCTATGCAATGTTTACGTAGCCATAATTGTGTTTTCTCCTGCTGACAAATTGTTCTGCTTTGGCCATCCTGACATTGACAGCATAATTGGTCGCTATCTCAAAGGAGACGCAGAGTTTGAACCACCAGCAGCTGCAAAGTCATCAAAAGGAAAATCATCAGTGTCATATGAAGAGTGTAACAAGCAATATGAAGAGTCAACGAAGAAGTTGGAGATGGAAAAGAGGAACTTGGCACAAACTGAAATATTGGCTAAGGGTTGGAACAGAAGGTGGTGGGACGATCCCATTGATCAGATGAGTGATCGTCACTTGGAGCAGTTTATGGTTTCCATTTATGAATTAAGGAAAAAACTAGCAGAAAGAGCAGCTGAATTGATGATGCTTGGGGTCATGATGTAG 540 0.4074 MDMFKQKKKNTGRKKIEIKKLDKASNKQVTFSKRRTGLFKKASELCILCNVYVAIIVFSPADKLFCFGHPDIDSIIGRYLKGDAEFEPPAAAKSSKGKSSVSYEECNKQYEESTKKLEMEKRNLAQTEILAKGWNRRWWDDPIDQMSDRHLEQFMVSIYELRKKLAERAAELMMLGVMM 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2050 179 PANTHER MADS BOX PROTEIN 8 175 - -
Aed1g2050 179 SUPERFAMILY SRF-like 12 81 IPR036879 GO:0003677|GO:0046983
Aed1g2050 179 Coils Coil 103 130 - -
Aed1g2050 179 Gene3D - 24 88 IPR036879 GO:0003677|GO:0046983
Aed1g2050 179 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Aed1g2050 179 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 67 IPR002100 GO:0003677|GO:0046983
Aed1g2050 179 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Aed1g2050 179 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Aed1g2050 179 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Aed1g2050 179 CDD MADS_MEF2_like 12 82 IPR033896 GO:0000977|GO:0045944
Aed1g2050 179 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Aed1g2050 179 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2050 Aed-Chr1 17232034 17232573 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2050 8 177 Type I MADS-box Gene Family AT5G60440 37.222 7.10e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aed1g2050 SRF-TF 4.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2050 - - gmx:100814979 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2050 1 17232034 17232573 Aed1g2050 1 17232034 17232573 ECH