Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2049 ATGACGTCCAAGGTTAAAAAGTCAAGCTTGGGTCGCCAAAAGATCCCAATAGAGAAAATACCCAAAAAGAGTCATTTGCAAGTTACATTCTCGAAGCGTCGTTCGGGGCTGTTCAAGAAAGCCAGTGAGCTCTGCACCCTTTGCGGTGTAGAGATCGCGATCGTGGTTTTCTCTCCGGCGGACAAGGCGTTCTCTTTCGGCCACCCGGAAGTGGAGTCCCTCATCGACCGTTACGCCACGCGGAACCACCCTGCGCCGCCGCACGAGTCGAGCGGTGCGCACCACCTCGTGGAGGCGCACCGCAACGCCAACGTTCGCGATCTGAACATGCAGCTGACTCAGGTTTTCAACCACTTGGAGATCGAGAAGAAGCGCGGGGATGACCTGGACCACGTGAGGAAAGCTAGGCAGAGGCAGTTTTGGTGGGAGAGCCCCGTTGACGACCATGGGTTGCATGAGTTGCTCCAATTGAAGGCTTCTATTGAGGAGCTCAAGAAGAACATTGAAAAACATGCCAGCAAATTCATGATTGAGCACTCTAATCATCATCATAATAATATACCTTCTTCTTCGTCTGCGGCAATTCTTGAACCTAATAATAATGGACTTGGTGGTCCTCTTGCACGTTATGACAATGCCTATGACTATGAGAACAAACCTGCTGCTGCTGCTGGGATGGGTATTGCTTCGTCAATTCCTAATGCGCATTATCTCGCTTTTCGCAATGGGTATCTTTGA 738 0.5054 MTSKVKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESLIDRYATRNHPAPPHESSGAHHLVEAHRNANVRDLNMQLTQVFNHLEIEKKRGDDLDHVRKARQRQFWWESPVDDHGLHELLQLKASIEELKKNIEKHASKFMIEHSNHHHNNIPSSSSAAILEPNNNGLGGPLARYDNAYDYENKPAAAAGMGIASSIPNAHYLAFRNGYL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2049 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
Aed1g2049 245 Coils Coil 154 174 - -
Aed1g2049 245 Gene3D - 22 90 IPR036879 GO:0003677|GO:0046983
Aed1g2049 245 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Aed1g2049 245 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Aed1g2049 245 CDD MADS_MEF2_like 11 78 IPR033896 GO:0000977|GO:0045944
Aed1g2049 245 Gene3D - 92 189 - -
Aed1g2049 245 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Aed1g2049 245 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Aed1g2049 245 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Aed1g2049 245 SUPERFAMILY SRF-like 11 83 IPR036879 GO:0003677|GO:0046983
Aed1g2049 245 PANTHER MADS BOX PROTEIN 9 192 - -
Aed1g2049 245 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 9 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2049 Aed-Chr1 17227172 17227909 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2049 7 176 Type I MADS-box Gene Family AT5G60440 54.971 7.51e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aed1g2049 SRF-TF 4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2049 - - gmx:100793705 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2049 1 17227172 17227909 Aed1g2049 1 17227172 17227909 ECH