Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2048 ATGTCCGATGGCGCTAATTCCGAGGGCGGTAAGAAAAACCGTGGCCGCCAAAAGATTGAGATTAAGAAAATGGATAACGAGAATAACCTACAGGTTACATTTTCGAAGCGCCGCAGTGGGCTTTTCAAGAAAGCCAGTGAGCTATGCACCCTTTGTGGTGCTAGCGTGACGATCATTGTGTTCTCGCCCGGCGACAAGGTGTTCTCGTTCGGGCATCCCAGTGTGGATTTCGTGTTAGACCGGTACCTCAATGGGGGCACACCGCCGGAAGCCGGCGACATGGAGCCGTTTGGTGCCCGCCAGCACGCCAACGTGCGTGACCTCAACTCGCAGCTGACGAACGTCAACTCTCAAACAGAGATGGAGCAAAGGCGGGCCAAAGAGTTGACCATCCTGCAGAAGGAGGCCAAAGAGCAGCTGTGGTGGGCCCGGCCCACAGAGGATATGAATCTGGACAAGGCGCTGAAGTTGAACACATTGATTAATGTGTTGAAGAACCAAGTGCACCGTCTTGCTGAGAAGGCTTTGTACGAGAGTGTTGCAGGTGAAAACCCAAACCCAATCATGGGTCATCAGTTTTATCCTGGGGGACCTTCCTCCTTCAACCCCAACATTGGGGTGTTTCAGCCACTGCAACAACTTCCCCTACCACCACCTTCGATGTTGCCTCATCCACAGATGATGATGCAGCAGCTGCAGTTGCAGCCACCACCAGGGCCCATGCCCATGTTTCCGAACTACGTGTTTCCCCTAGACGGGGTGAATATGATGAATCCTCATGTGTTTATTAATGACATGGGAATGGGAGGAGGAGGAGGAGCATTTGAAGGACCACCAGGACCTTCTGCTGGAGGTGGTGGTGGTGGTGCTGGACCTTCTGGTGCTGCTGAACCTTCCGGTGGTGGTGGTTTCTTTTGA 918 0.5327 MSDGANSEGGKKNRGRQKIEIKKMDNENNLQVTFSKRRSGLFKKASELCTLCGASVTIIVFSPGDKVFSFGHPSVDFVLDRYLNGGTPPEAGDMEPFGARQHANVRDLNSQLTNVNSQTEMEQRRAKELTILQKEAKEQLWWARPTEDMNLDKALKLNTLINVLKNQVHRLAEKALYESVAGENPNPIMGHQFYPGGPSSFNPNIGVFQPLQQLPLPPPSMLPHPQMMMQQLQLQPPPGPMPMFPNYVFPLDGVNMMNPHVFINDMGMGGGGGAFEGPPGPSAGGGGGGAGPSGAAEPSGGGGFF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2048 305 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 70 IPR002100 GO:0003677|GO:0046983
Aed1g2048 305 Gene3D - 98 183 - -
Aed1g2048 305 PRINTS MADS domain signature 51 72 IPR002100 GO:0003677|GO:0046983
Aed1g2048 305 PRINTS MADS domain signature 16 36 IPR002100 GO:0003677|GO:0046983
Aed1g2048 305 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677|GO:0046983
Aed1g2048 305 Gene3D - 26 90 IPR036879 GO:0003677|GO:0046983
Aed1g2048 305 CDD MADS_MEF2_like 15 85 IPR033896 GO:0000977|GO:0045944
Aed1g2048 305 SUPERFAMILY SRF-like 15 84 IPR036879 GO:0003677|GO:0046983
Aed1g2048 305 SMART madsneu2 14 73 IPR002100 GO:0003677|GO:0046983
Aed1g2048 305 MobiDBLite consensus disorder prediction 273 305 - -
Aed1g2048 305 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 14 171 - -
Aed1g2048 305 ProSiteProfiles MADS-box domain profile. 14 74 IPR002100 GO:0003677|GO:0046983
Aed1g2048 305 PANTHER MADS BOX PROTEIN 14 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2048 Aed-Chr1 17215873 17216790 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2048 11 153 Type I MADS-box Gene Family AT5G60440 55.479 1.28e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aed1g2048 SRF-TF 3.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2048 - - gmx:100794229 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2048 1 17215873 17216790 Aed1g2048 1 17215873 17216790 ECH