Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2026 ATGGTTACGGTTAATGGAACACCCTACCACAAGGGCTGCTTCAAATGTACCTATGGAGGTTGTACTATAAGCTCATCAAACTTCATCACACACGAAGCTAAGCTATACTGCAAACACCATCACATTCAACTTTTCAAGGAGAAGGGCAATTACAGTCAGCTCGAGAATGACCTAGTTGCAACCCCAGAAGTCGCTGCTTGA 201 0.4428 MVTVNGTPYHKGCFKCTYGGCTISSSNFITHEAKLYCKHHHIQLFKEKGNYSQLENDLVATPEVAA 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2026 66 Gene3D Cysteine Rich Protein 1 65 - -
Aed1g2026 66 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 2 59 - -
Aed1g2026 66 ProSiteProfiles LIM domain profile. 1 47 IPR001781 -
Aed1g2026 66 Pfam LIM domain 3 44 IPR001781 -
Aed1g2026 66 PANTHER OS06G0237300 PROTEIN 2 59 IPR045268 GO:0051015
Aed1g2026 66 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2026 Aed-Chr1 17066921 17068666 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed1g2026 LIM 1.2e-08 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2026 K09377 - gmx:100306027 124.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2026 1 17066921 17068666 Aed1g2026 1 17066921 17068666 ECH