Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2015 ATGGATCCTACTGAGCAAATTTCTGAAGAATGGAGTTCTCTTAGTGGATTCTACACTGCTGAGGAAGCTGACTTCATGAGCCAGTTTCTTGGTAACTGCTCACTTCCTGAGAGCCTCTGTGGAAATTTCAATTTGGGAATTCCATCAGCTATATGGCCTGGCCATGAATCAACAATAGTCAGCGTGACAGGCATCAGTGAAAGTCCATATTTTCCTACAAATGCTGATAATAATAGTAATGCTAACTATTTGTGTTTTTCACAAGGAAGTAGCTCCACTGCTGATAGTAGCAATAAGTGTGATCCGGTAGCCAACATTGGCTACATGTCCATGGGTTTTTCCTTGGCTGAAAACACTGATGAAGAGTTAGGTCTAGAGGTTATTGCTGAAAGGAATTTGCAGGATCACCAGGAATGTGAAGTACTAGTTTCTGAAGCTGCACAAGAGGATATAAACACCAATGTGGAAAAGTCAGGAAAAAGATCTAGGGGCTCAATGCAGGTGCGAAAGAGCAAGAAAAATGTGAAATCCATGAAGAAACCAAAGTCTGATTCTGTTATAAGTAACTCTGAAGAGGGTAGAAGTGCTGATCTTCAGGGTTGCTGCTCAGAGGATGATGACTCCAATGCTTCTCAGGATCTAAATGGAGGAGGATCTTCAAGTTTGAGCCTGGAGGATTCTACATCTCTTAAGTTGAAGGGAAAAAAATCAACACATAATAGAGGTTCTGCTACTGATCCACAGAGTGTATATGCAAGGAGAAGAAGAGAAAGAATAAATGAAAGGTTGAGAATTCTACAAAACCTTGTCCCCAATGGAACCAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTGCAGCTCCAAATTAAGCTTCTGAGCTCTGATGATCTCTGGATGTACTCTCCAATTGCTTACAATGGAATGAGCCTTGGACTAGACCTCAATAGTATCCCAACCAAACAACCATAG 990 0.4141 MDPTEQISEEWSSLSGFYTAEEADFMSQFLGNCSLPESLCGNFNLGIPSAIWPGHESTIVSVTGISESPYFPTNADNNSNANYLCFSQGSSSTADSSNKCDPVANIGYMSMGFSLAENTDEELGLEVIAERNLQDHQECEVLVSEAAQEDINTNVEKSGKRSRGSMQVRKSKKNVKSMKKPKSDSVISNSEEGRSADLQGCCSEDDDSNASQDLNGGGSSSLSLEDSTSLKLKGKKSTHNRGSATDPQSVYARRRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYSPIAYNGMSLGLDLNSIPTKQP 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2015 329 MobiDBLite consensus disorder prediction 181 228 - -
Aed1g2015 329 MobiDBLite consensus disorder prediction 152 254 - -
Aed1g2015 329 PANTHER TRANSCRIPTION FACTOR BHLH54 8 323 - -
Aed1g2015 329 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 323 - -
Aed1g2015 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 241 308 IPR036638 GO:0046983
Aed1g2015 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 292 IPR011598 GO:0046983
Aed1g2015 329 Gene3D - 245 306 IPR036638 GO:0046983
Aed1g2015 329 Pfam Helix-loop-helix DNA-binding domain 253 293 IPR011598 GO:0046983
Aed1g2015 329 SMART finulus 249 298 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2015 Aed-Chr1 17000627 17002123 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2015 10 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 39.722 1.48e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed1g2015 HLH 7.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2015 - - gmx:100817334 538.495