Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2014 ATGGAACCTGCTCAATTGATGTCTGAAGAATGGGGTTCTCTTTGTGGATTGCACACAACTGAAGAAGCTGACTTCATGGCTCAGTTGTTTGGTGGTAACTATTCTGCCACAGAAAAGCAATGTGGAAATGCCACTTTTGACTTTTGGCCTGGCCATGATGATGAATCCACAATAGTGGCCATGACAGACACTAGTAATAACTCACACTCACCTTCAAATGTTACAGATACTAATTTTTTGTTTTTCTCACAAGGGAGTAGCCCCAGCACTGATAGTGGTAGCAATATCTTTTCCACTATAAGTAGTGGAACCTACTCCTATGATCCATCAAAAAACTTTGACTCTATGTCAATGGTTTTGTGCCTGGGAGATGCCAAATTTAGTCCCCATAGTTTTAAATGGAATGACAACTTAAGCCAACAGATAAATGAAAACATTCACATTGATGAAGAGTTTGAAATGATGGTTCCTGAACCCGTAGAAGAAGATAGAAGCAGAGACCTGGAGAATCTATCAAAAAGACTAAAGAGCTCAATAGAGGTCACAGAAACATTGAGGAATGCTAAATCAAGGAAAAATTCAAAATCTGGTTCAATAAGCAACGATGAAGATGATAGAAGCTTGAGCCTCCAAGTCCAAAGGCATAGAAAATCAAGACCAATTACCGGTTCTGCCACTGATCCACCGAGCCTCTATGCAAGAAAGAGAAGAGAAAGAATAAATGAAAGGTTGAGAATACTGCAAAATCTAGTCCCTAACGGAACCAAGGTGGATATCAGCACAATGCTCGAGGAAGCTGTACAATACGTTAAGTTTTTACAGCTTCAAATTAAGATTCTGAGCTCTGACGATATGTGGATGTATGCTCCAATTGCTTACAATGGAATAAACATTGGACTAGACCGCAGTATTTCTCCAACCAAAGGAAGATGA 933 0.3966 MEPAQLMSEEWGSLCGLHTTEEADFMAQLFGGNYSATEKQCGNATFDFWPGHDDESTIVAMTDTSNNSHSPSNVTDTNFLFFSQGSSPSTDSGSNIFSTISSGTYSYDPSKNFDSMSMVLCLGDAKFSPHSFKWNDNLSQQINENIHIDEEFEMMVPEPVEEDRSRDLENLSKRLKSSIEVTETLRNAKSRKNSKSGSISNDEDDRSLSLQVQRHRKSRPITGSATDPPSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKILSSDDMWMYAPIAYNGINIGLDRSISPTKGR 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2014 310 MobiDBLite consensus disorder prediction 185 212 - -
Aed1g2014 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 230 290 IPR036638 GO:0046983
Aed1g2014 310 MobiDBLite consensus disorder prediction 185 234 - -
Aed1g2014 310 Gene3D - 230 289 IPR036638 GO:0046983
Aed1g2014 310 CDD bHLH_AtIND_like 225 287 - -
Aed1g2014 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 224 273 IPR011598 GO:0046983
Aed1g2014 310 SMART finulus 230 279 IPR011598 GO:0046983
Aed1g2014 310 Pfam Helix-loop-helix DNA-binding domain 234 274 IPR011598 GO:0046983
Aed1g2014 310 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 205 - -
Aed1g2014 310 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 176 306 - -
Aed1g2014 310 PANTHER TRANSCRIPTION FACTOR BHLH54 7 205 - -
Aed1g2014 310 PANTHER TRANSCRIPTION FACTOR BHLH54 176 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2014 Aed-Chr1 16996882 16998221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2014 200 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 77.228 1.01e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed1g2014 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2014 - - gmx:100816788 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2014 1 16996882 16998221 Aed1g2014 1 16996882 16998221 ECH