Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2010 ATGCTCACATCCACTAACTACACACAACACAACACAGTCTCAACCAAACACACCAAACTAGTTCAGTTCGCTCGATCTCTTTCAATTTTAATGGCTTTGGAGGCTTTGAATTCACCAACAGCAGCGACCACTCCCTTCTGTCGCTACCAAGAAGAGGAAGAGGAGGTTGATCTTCACTTACGCGAGCCTTGGGCTAAACGGAAGCGCTCCAAACGACCGCGTTTTGAGACGGAAGAAGAGTACCTCGCTCTTTGCCTCATCATGCTCGCACAAAGCGGCAACAACAGAAACACTGAATTACCGTCATCATCGTCACAGTCACTGTCACTGTCACACAAAGGAGCGTCACCGCCGGTGAAACTAACGCACAAGTGCACCATTTGCAACAAGGCCTTTTCTTCTTACCAAGCACTCGGTGGACACAAGGCCAGTCATCGCAAGGCTTCCTCGGAATCCACCACCACCACCACCGCCACCTCCGCTGTCTCTGCCGTAGCCAACGACAGCGTTTCCGCCTCCACCGCCATCGGCGGCGGAAGGATGCACGAGTGTACCATCTGTCACAAGAGTTTCCCTACCGGTCAGGCCCTGGGTGGCCACAAGCGCTGCCACTACGACGGCGGAAACAACCACAGCAACAACAGCAACGTCAATGGCAACAACAGCAGCGGCGGCGTCACTTCCTCCGATGGCGGCGCTGCCTCCTCCCACGCGCTCCGTGGGTTTGACCTGAACCTGCCGGCGCCGCTGACGGAGTTCTGGTCTCCGCCGGTGGGATTCGACTTCGGGAAGAAGAAGATTGACGGTGAACAAGAGGTGGAAAGCCCGTTGCCGGTAACCGCCAAGAGGCAGCGTTTGTTTTCAAGGGAAGATGATGATGAAACGGCGTAG 891 0.5522 MLTSTNYTQHNTVSTKHTKLVQFARSLSILMALEALNSPTAATTPFCRYQEEEEEVDLHLREPWAKRKRSKRPRFETEEEYLALCLIMLAQSGNNRNTELPSSSSQSLSLSHKGASPPVKLTHKCTICNKAFSSYQALGGHKASHRKASSESTTTTTATSAVSAVANDSVSASTAIGGGRMHECTICHKSFPTGQALGGHKRCHYDGGNNHSNNSNVNGNNSSGGVTSSDGGAASSHALRGFDLNLPAPLTEFWSPPVGFDFGKKKIDGEQEVESPLPVTAKRQRLFSREDDDETA 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2010 296 ProSitePatterns Zinc finger C2H2 type domain signature. 125 145 IPR013087 -
Aed1g2010 296 SUPERFAMILY beta-beta-alpha zinc fingers 123 204 IPR036236 -
Aed1g2010 296 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 32 287 IPR044653 GO:0003700
Aed1g2010 296 SMART c2h2final6 123 145 IPR013087 -
Aed1g2010 296 SMART c2h2final6 182 204 IPR013087 -
Aed1g2010 296 MobiDBLite consensus disorder prediction 96 115 - -
Aed1g2010 296 MobiDBLite consensus disorder prediction 264 296 - -
Aed1g2010 296 Gene3D Classic Zinc Finger 120 204 - -
Aed1g2010 296 MobiDBLite consensus disorder prediction 96 113 - -
Aed1g2010 296 Pfam C2H2-type zinc finger 123 147 - -
Aed1g2010 296 Pfam C2H2-type zinc finger 182 206 - -
Aed1g2010 296 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 32 287 - -
Aed1g2010 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 182 204 IPR013087 -
Aed1g2010 296 ProSitePatterns Zinc finger C2H2 type domain signature. 184 204 IPR013087 -
Aed1g2010 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 150 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2010 Aed-Chr1 16976378 16977268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2010 31 286 C2H2 Transcription Factor Family AT1G27730 41.132 3.59e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed1g2010 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2010 - - gmx:100806788 369.007