Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2007 ATGAGATCGTCTTCTTCAAGATTATTCTGGACAGAACTCTTCAACGGGGAAAGATTATTATCTTTTTTTCTTTTCTTGACATACCATGTTGCTTCAGAGAACAAAGGTGACAGTGCTGCTGCAACCTCTGGATCTAAAGCTCCCTCTTTTAGTGTTTGCATGAAGCCTTCCTATGCCGATGGATATTTCATGTGCATTCCATCAACATTTGGAAAAAAGTATCTGAAGGAAATGCAAAGAGATGATATCCTACTTCAGGTCTCGGGTGGGAGAACTTGGACTGTTAAAATAAATTCGTACAAATTGTGCACCGGATGGAAAAAAATTGCTTCAGCTAATCATTTGAAAACAGGAGATATTTGTGTTTTTGAGCTCACTGAGAATCGAGGCTCATGTTGTTTTAATGTAAAAATCATTAGGATTTTAGAAGAAACAGCTTCATCTTCATGTTCACAAGTTCAAGGAGATGGAGACCCTAGGGGAATCCCACATTTGAAAAGTATTACCGCCCTTCCCATCGGAGCTATGCGAGAAGCTAAGAAGTTCACCTCACAAAACGCCTTTTGCGAAATCACTTTAAAGGCAAATTGTAAGGGAGATATCAGACCGGTAAGGTTTAGTTATGAAGCAAAATTATTAATTAATTTCCTTTTATATATATATATATATATATATATAGAATGA 684 0.367 MRSSSSRLFWTELFNGERLLSFFLFLTYHVASENKGDSAAATSGSKAPSFSVCMKPSYADGYFMCIPSTFGKKYLKEMQRDDILLQVSGGRTWTVKINSYKLCTGWKKIASANHLKTGDICVFELTENRGSCCFNVKIIRILEETASSSCSQVQGDGDPRGIPHLKSITALPIGAMREAKKFTSQNAFCEITLKANCKGDIRPVRFSYEAKLLINFLLYIYIYIYIE 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2007 227 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 38 140 IPR044837 -
Aed1g2007 227 ProSiteProfiles B3 DNA-binding domain profile. 49 142 IPR003340 GO:0003677
Aed1g2007 227 Pfam B3 DNA binding domain 52 140 IPR003340 GO:0003677
Aed1g2007 227 SMART B3_2 50 142 IPR003340 GO:0003677
Aed1g2007 227 Gene3D - 30 143 IPR015300 -
Aed1g2007 227 CDD B3_DNA 48 140 IPR003340 GO:0003677
Aed1g2007 227 SUPERFAMILY DNA-binding pseudobarrel domain 44 140 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2007 38 143 REM Transcription Factor Family AT1G49480 35.135 4.15e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed1g2007 B3 4.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2007 - - ccaj:109813514 167.162