Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2006 ATGGCTTCCGCGACGGGGCGAGAGTTGTCGAATCCTCCATCGGACGGCATCACCAACATCCGATTCTCCAATCACAGCGACCATCTACTCGTCTCCTCGTGGGACAAGAGTGTGCGTTTGTATGATGCGAGTGCCAATGTGTTGAGAGGAGAGTTTATGCACGCCGGCCCCGTCCTCGATTGCTGCTTCCACGACGACTCCTCCGGCTTCAGTGCCTCCGCCGACAACACTGTTAGACGGCTTGTCTTCAGTTCTAATAAAGAGGATATTCTGGGAAGGCATGATGCACCTGTTCGTTGCATTGAGTACTCATATGCTGCAGGGCAATTGATCACTGGTAGTTGGGACAAAACCCTGAAATGTTGGGATCCTAGAGGTGCAAGTGGCCAAGACCGCACACTCGTTGGGACGTATCCACAGCCTGAACGTGTTTACTCTCTTTCTCTGGTTGGACATCGTCTGGTTGTAGCAACTGCTGGAAGACATATTAATATCTATGATTTGAGGAACATGTCTCAACCTGAGCAAAGAAGAGAATCATCATTAAAATACCAAACCAGATGTGTGCGCAGTTACCCTAATGGAACAGGATACGCACTTAGTTCAGTAGAGGGCCGGGTTGCTATGGAATTCTTTGACCTCTCAGAGACTAGCCAAGCAAAAAAATACGGTACATTTGCCACAGGAGGTTGTGACGGATATGTTAATGTATGGGACGGAAACAATAAGAAGAGGCTATACCAGTACTCTAAATATCCAACTAGCGTTGCAGCACTATCGTTTAGCAGAGATGGACGGCTGTTGGCTGTTGCATCAAGTTACACATTCGAAGAGGGACCTAAAAGCCAAGAACAAGATGCTATCTTCGTTCGTAGTGTAAACGAGATTGAGGTCAAGCCCAAACCCAAAGTCTATCCCAATCCTCCAGCGTGA 933 0.4802 MASATGRELSNPPSDGITNIRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHAGPVLDCCFHDDSSGFSASADNTVRRLVFSSNKEDILGRHDAPVRCIEYSYAAGQLITGSWDKTLKCWDPRGASGQDRTLVGTYPQPERVYSLSLVGHRLVVATAGRHINIYDLRNMSQPEQRRESSLKYQTRCVRSYPNGTGYALSSVEGRVAMEFFDLSETSQAKKYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSVAALSFSRDGRLLAVASSYTFEEGPKSQEQDAIFVRSVNEIEVKPKPKVYPNPPA 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2006 310 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.2 3 223 - -
Aed1g2006 310 SMART WD40_4 5 42 IPR001680 GO:0005515
Aed1g2006 310 SMART WD40_4 45 82 IPR001680 GO:0005515
Aed1g2006 310 SMART WD40_4 131 167 IPR001680 GO:0005515
Aed1g2006 310 SMART WD40_4 84 123 IPR001680 GO:0005515
Aed1g2006 310 SMART WD40_4 185 239 IPR001680 GO:0005515
Aed1g2006 310 PRINTS G protein beta WD-40 repeat signature 110 124 IPR020472 -
Aed1g2006 310 PRINTS G protein beta WD-40 repeat signature 226 240 IPR020472 -
Aed1g2006 310 PRINTS G protein beta WD-40 repeat signature 29 43 IPR020472 -
Aed1g2006 310 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 91 123 - -
Aed1g2006 310 Gene3D - 3 304 IPR015943 GO:0005515
Aed1g2006 310 ProSiteProfiles Trp-Asp (WD) repeats profile. 91 123 IPR001680 GO:0005515
Aed1g2006 310 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.2 223 305 - -
Aed1g2006 310 PANTHER MRNA EXPORT FACTOR AND BUB3 3 223 - -
Aed1g2006 310 PANTHER MRNA EXPORT FACTOR AND BUB3 223 305 - -
Aed1g2006 310 SUPERFAMILY WD40 repeat-like 12 273 IPR036322 GO:0005515
Aed1g2006 310 Pfam WD domain, G-beta repeat 91 123 IPR001680 GO:0005515
Aed1g2006 310 Pfam WD domain, G-beta repeat 15 42 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2006 Aed-Chr1 16936624 16939664 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2006 70 248 Eukaryotic Initiation Factors Gene Family AT2G46280 28.495 1.37e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2006 K02180 - gmx:100808389 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2006 1 16936624 16939664 Aed1g2006 1 16936624 16939664 ECH