Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2004 ATGGGACACTCCAACGTTTGGAACTCTCACCCCAAAAACTACGGTCCTGGTTCTCGCACTTGCCGTGTGTGTGGTAATCCACATGGATTGATCCGGAAGTATGGTCTCATGTGCTGTAGACAGTGCTTCCGCAGCAACGCCAAGGAAATTGGCTTCATCAAGTCTATGTTGCGTTCATCTGATCATTATAGCCCAGTAATTTCGAGGAAGGGTAGGGCGGTACAAAATGTTAAACCTCATTTTCTTTTTGTTTTGATTGTGATGTCAAATGTAGTCATCATCCAAACTCCAAAGATCACCTGGAAACTATTTTGGATAGAGATGTCTCTAAATGCTAAAGTAATTAGCACAATATGGAACACATTTTTCACATAA 375 0.416 MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKSMLRSSDHYSPVISRKGRAVQNVKPHFLFVLIVMSNVVIIQTPKITWKLFWIEMSLNAKVISTIWNTFFT 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2004 124 Pfam Ribosomal protein S14p/S29e 7 55 IPR001209 GO:0003735|GO:0005840|GO:0006412
Aed1g2004 124 Gene3D 30s Ribosomal Protein S14; Chain N 1 55 IPR043140 -
Aed1g2004 124 PANTHER 40S RIBOSOMAL PROTEIN S29 1 54 IPR039744 GO:0003735|GO:0008270
Aed1g2004 124 PANTHER 40S RIBOSOMAL PROTEIN S29 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2004 Aed-Chr1 16922672 16927445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2004 1 54 Cytoplasmic Ribosomal Protein Gene Family AT4G33865 92.593 2.77e-33 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2004 K02980 - gmx:100775561 126.716
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1950 11 22233737 22235414 Aed1g2004 1 16922672 16927445 PCT