Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1996 ATGACGAGCGCTTCGGAGCTATTCCACTCAAGAAGGCATCGGTTGGGACGAAGTGCACTCGATCTAGGGCTCGACACCGAACTCCACGCCGTCGATTCTCTCCGGCGCCACTACCACATCCGCCGCCTCCGTCACCACCCGGAGCGTGCATCTGATAGAATTGATGGGAGGTATCGGCGGTCTTCGGTAAGTGAGAGCGTTGATTCCGAAGAAAATGTAAGAAGTAGCAGCCTTAGAGGGAGTGAGAGACTACCTGTAGGTGTGGTTCTTGCACGGGCAAGACTCCTTCAGAGGTTGAGAGGGGAACCTCTTTCTACTAACAGGCGATATGGTAGAGATTTATTTGGTGAGGATCAAGAAAGTGAATCATCCAATGAAGTTCCAACCAGGGCATCTCCTCTAGTTACTGACTTGACTTCTCAAATGGCAAGGTCCCAGTTCTTGCAAGAACTAAACAAAAAGCCACCTGGGCTTACTCAAGAGGCCTTGGACTGTTTGCATCAGGAAGTTTTTAGCAGTGGCGAGATAGGTTTGGAGCCCGGGGTACTGCAGGATTGCAGTATATGCTTGGAATCTTTCACAGATGGAGATGAGCTGATACGTTTGCCGTGTGGACATAAATTTCACTCTGTTTGCTTGGATCCTTGGATTCGCGGCTGTGGAGACTGTCCATACTGCCGAAGATGTATAGCTGTAAATACTCACTTACCCCAAAACCAAGATGAGTAG 729 0.4952 MTSASELFHSRRHRLGRSALDLGLDTELHAVDSLRRHYHIRRLRHHPERASDRIDGRYRRSSVSESVDSEENVRSSSLRGSERLPVGVVLARARLLQRLRGEPLSTNRRYGRDLFGEDQESESSNEVPTRASPLVTDLTSQMARSQFLQELNKKPPGLTQEALDCLHQEVFSSGEIGLEPGVLQDCSICLESFTDGDELIRLPCGHKFHSVCLDPWIRGCGDCPYCRRCIAVNTHLPQNQDE 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1996 242 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Aed1g1996 242 MobiDBLite consensus disorder prediction 52 67 - -
Aed1g1996 242 MobiDBLite consensus disorder prediction 52 78 - -
Aed1g1996 242 MobiDBLite consensus disorder prediction 107 130 - -
Aed1g1996 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 232 IPR013083 -
Aed1g1996 242 SUPERFAMILY RING/U-box 185 234 - -
Aed1g1996 242 SMART ring_2 186 226 IPR001841 -
Aed1g1996 242 CDD RING-H2_PA-TM-RING 185 227 - -
Aed1g1996 242 Pfam Ring finger domain 185 227 IPR001841 -
Aed1g1996 242 PANTHER SI:CH211-59O9.10 1 232 - -
Aed1g1996 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 1 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1996 Aed-Chr1 16883095 16885346 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1996 1 231 C3H Transcription Factor Family AT1G49850 43.629 1.12e-46 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1996 - - gmx:100814695 373.629