Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1986 ATGATTCCAAACAAGTTCACTAGAATTTATGGTGCTCAAAGTGGCATTCAATGGAAAGTTTATTGGACAAAAGATGATGGTGGCCGTATTTGGCTTGCAAAAGGTTGGAATGAGTTTGCTACACATTACTCCCTAAGTTACGGGCATATGGTACTGTTTGAGTACCAAAAAACATGTAATAATTTGGACCTGGACGTAATGATATTTGACGTCACTGGCATTGCTACTTTTGAATCAAATTATCCCTTCCATCATACTCAGAATGAAAATGACAACCTTGGCCAGAATACTAATGAGACTTTTGAAGTTTTGGATGAGCTCTATTTTTTCATAACATACCATGTGTTCAATGTTTCAGCCACTAGCTATGTGGAGCAGTTAACTTCTAAAGATGTAAATGGATCTTCAACCTCAAAGTCTAACGCTCCCTCTTTCACGGTCGTCATGAAGCGTACCTATGTGGGTGGATATATCATGCACTTTAATGATCTAGTGTTTAGATTTTCTAACTCTTGTGAGAAAAGATTCAGGTCATTCCATCGACATTTGCCAAACAGTATGCTGAGAAAAGCGGCTAAGTTCACCTCGGACAATCCCTTTTTCAAAATCACTATGAAGTCAAATTCTAAGGAAGACACCAGACCGGTATTGGTTAAATACAGTGTTTGA 669 0.3812 MIPNKFTRIYGAQSGIQWKVYWTKDDGGRIWLAKGWNEFATHYSLSYGHMVLFEYQKTCNNLDLDVMIFDVTGIATFESNYPFHHTQNENDNLGQNTNETFEVLDELYFFITYHVFNVSATSYVEQLTSKDVNGSSTSKSNAPSFTVVMKRTYVGGYIMHFNDLVFRFSNSCEKRFRSFHRHLPNSMLRKAAKFTSDNPFFKITMKSNSKEDTRPVLVKYSV 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1986 222 ProSiteProfiles B3 DNA-binding domain profile. 1 72 IPR003340 GO:0003677
Aed1g1986 222 Pfam B3 DNA binding domain 13 70 IPR003340 GO:0003677
Aed1g1986 222 Gene3D - 2 73 IPR015300 -
Aed1g1986 222 PANTHER B3 DOMAIN-CONTAINING 1 208 - -
Aed1g1986 222 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 1 208 - -
Aed1g1986 222 SUPERFAMILY DNA-binding pseudobarrel domain 1 72 IPR015300 -
Aed1g1986 222 CDD B3_DNA 1 70 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1986 2 102 B3 DNA Binding Superfamily AT4G01580 30.088 1.11e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1986 - - ccaj:109813514 122.094