Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1985 AACTCTCACGAAACTCAACTCAACTCAACTCTCTCTCTCTCCCTCACCCTCCTCGCTCGCACCCCATCCCCATTTCGTTTCAGATCGAACCCTTCTCCCTTTCCCATTCGCTGCGGAGACTACTATTTTACTCACACCCACCACACCCACACCTTATTAGGTTCACATTCAGATTATAGTGGTGGATGCTGCGGTGGTGCGGGTTTTCTCAGACCTATGGCAAGTCCAACCGGAGAATTGACAAGCCATAACAACGGTACCAGGGAGCGGATTGGAGCTGAACAATGTGATTTGTCTGAAAAAACGCCTCAGACAGGCTCTGAAGGTTTAGAAAATGAACAAAAAGAGCTTGCTACTGAGCACGAAAAATCAAATCAAGTTTCCGCCAATGTTACAGAGAATTCTGTTATTCTACTGCCTGCACCGCCTCAGCATGACTTAGAAAAGACTTGCCAGACTGTAGATGTTGAACAAAGTACCGTTGAACAAGTCCCTGTTGATATATCTAATGATAAACCTGAAAACCAATGCCAACCATTGTCTGAAAATGTTCAAAGTGAACCCGTAGACTCCGTTCCTGCCTTTGTTGTTGAAGGCCAAATGGAATCCAGTCCAGCTCAAGCGAATATGAGTTCTGTGGATGAATTGTTGGATCAACCTTCTCGAGATGTTGTGAACAATATTAGTTCCAATTGTTCAGAAAAAATGTCTAACAGCCCAACTCATTCACAATCGAGGCACAAGGGTAAAAAGAACTACAAGTTATTGAAGAAAAAGTATATGCTAAGGTCGTTGGGAAGCAGTGACAGAGCTTTGCGGTCAAGAACAAAAGAAAACCCCCAGGAACCTGAACAAACTAGTAATTTGGTTGATGGTAATAATAATGGAGTTAAGAGGAAACGTGGGAGGAAGAAGAAGACAAGAGACGAGGGAATTATTGATCAGTTTTCTAGAATCAGATCTCACTTAAGATATTTATTAAACCGAATAAGCTATGAAACAAACTTGATTGATGCTTATTCTGCCGAGGGATGGAAAGGATACAGTCTGGAAAAATTAAAGCCTGAGAAGGAGCTTCAGCGGGCTAAGTCTGAAATTCTTCGACGCAAATTGAAAATTAGGGATCTATTTCGAAATTTGGACTCATTGTGTGCTGAAGGAAAGTTTCCAGAATCTTTGTTTGATTCCGCAGGAGAGATTGACAGTGAGGATATATTTTGTGCAAAATGCCAGTCCAAAGAGTTGAGCACCAATAATGATATAATTCTTTGTGATGGTGTTTGTGACCGTGGATTTCACCAGCTCTGTTTGGATCCTCCGTTGTTAACTGAAGACATTCCACCTGGTGATGAGGGTTGGTTATGTCCTGGATGCGATTGCAAAGATGACTGCATGGACCTTGTTAACGACTCCTTTGGAACAAGTCTCTCTATTAGTGACACCTGGGAGAGAGTCTTTCCTGAAGCAGCATCAGTTGCTGGAAATAATATGGATAACAACTTGGGACTTCCTTCTGATGATTCTAATGATGATGATTATAATCCTAATGCTCCAGATGATGTGAAAGTTGAAGGGGATGAGTCAAGTTCTGATGAATCTGAGTATGCTTCTGCTTCTGAGAAATTGGAGGGTGGTTCGCATGATGATCAATACTTGGGCCTTCCATCTGAGGATTCTGATGATGGTGATTATGATCCTGATGCTCCAGATGTTGAATGTAAAGTCAATGAAGAAAGTTCAAGCTCTGATTTCACATCTGACTCTGAGGATCTTGCTGCTGCAATTGAGGATAACACATCCCTTGGGCAGGATGGAGTCATCAGTTCTAGAAAAAAGAAGGGTAAAGTTGGTAAGAAGCTATCTATGGCTGATGAACTGTCATCTTTACTAGAGCCAGATTCTGGTTCCACTCCTGTTTCTGGGAAAAGACATGTGGAAAGGTTGGACTACCAAAAACTGTATGAGGAGACGTACCACAGTGATACTAGTGATGATGAAGATTGGAGTGACACTGCTGCTCCAAGTAGAAAAAAGAAACTCACTGGCAATGTGACTCCAGTGGCACCAAATGGAAATGCTTCAAATAATTCTATACATATTCCCAAGAGGAATGCTCATCAGAATACAGTTGAAAATACAAATAATTCACCCACTAAATCACTTGATGGCTGTACGAAATCTGGCTCCAGGGCTAAAAAGTCTGGATCTTCAGCACACAAAAAACTAGGAGAAGCCGTAGTTCAGAGACTTCACAAATCTTTTAAAGAAAATCAGTATCCGGATAGAACCACAAAAGAAAGCTTGGCAGAAGAACTTGGACTTACTTATCAGCAGGTTGCCAAATGGTTTGAGAATACACGTTGGAGCTTCCGGCATCCACCACAAATGGAAACCAATTCAGGTAGAAATGCTTCACAGCAAGCTACTGATGGCACAGCTGAAAATGAGGGGGAGAAGGAATGTGAATTAATGTCCCCGGAGGTCAGTGGAGAAAAATCAAAATCTCCCAGCTCTAGAAAAAGGAAGCATTTGTCAGAACCCCAAGCATCTGAAGCACAGCTGGATACCAATGGCTCAGCAACAAGTTCACCAAATCTTCATCAAATGAAGACAAGGAAAAGAAAATGA 2628 0.4201 NSHETQLNSTLSLSLTLLARTPSPFRFRSNPSPFPIRCGDYYFTHTHHTHTLLGSHSDYSGGCCGGAGFLRPMASPTGELTSHNNGTRERIGAEQCDLSEKTPQTGSEGLENEQKELATEHEKSNQVSANVTENSVILLPAPPQHDLEKTCQTVDVEQSTVEQVPVDISNDKPENQCQPLSENVQSEPVDSVPAFVVEGQMESSPAQANMSSVDELLDQPSRDVVNNISSNCSEKMSNSPTHSQSRHKGKKNYKLLKKKYMLRSLGSSDRALRSRTKENPQEPEQTSNLVDGNNNGVKRKRGRKKKTRDEGIIDQFSRIRSHLRYLLNRISYETNLIDAYSAEGWKGYSLEKLKPEKELQRAKSEILRRKLKIRDLFRNLDSLCAEGKFPESLFDSAGEIDSEDIFCAKCQSKELSTNNDIILCDGVCDRGFHQLCLDPPLLTEDIPPGDEGWLCPGCDCKDDCMDLVNDSFGTSLSISDTWERVFPEAASVAGNNMDNNLGLPSDDSNDDDYNPNAPDDVKVEGDESSSDESEYASASEKLEGGSHDDQYLGLPSEDSDDGDYDPDAPDVECKVNEESSSSDFTSDSEDLAAAIEDNTSLGQDGVISSRKKKGKVGKKLSMADELSSLLEPDSGSTPVSGKRHVERLDYQKLYEETYHSDTSDDEDWSDTAAPSRKKKLTGNVTPVAPNGNASNNSIHIPKRNAHQNTVENTNNSPTKSLDGCTKSGSRAKKSGSSAHKKLGEAVVQRLHKSFKENQYPDRTTKESLAEELGLTYQQVAKWFENTRWSFRHPPQMETNSGRNASQQATDGTAENEGEKECELMSPEVSGEKSKSPSSRKRKHLSEPQASEAQLDTNGSATSSPNLHQMKTRKRK 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1985 875 SMART PHD_3 406 459 IPR001965 -
Aed1g1985 875 MobiDBLite consensus disorder prediction 493 511 - -
Aed1g1985 875 Pfam Homeodomain 746 789 IPR001356 GO:0003677
Aed1g1985 875 MobiDBLite consensus disorder prediction 685 732 - -
Aed1g1985 875 CDD PHD_PRHA_like 406 458 IPR045876 -
Aed1g1985 875 MobiDBLite consensus disorder prediction 75 128 - -
Aed1g1985 875 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 160 842 - -
Aed1g1985 875 SMART HOX_1 731 797 IPR001356 GO:0003677
Aed1g1985 875 MobiDBLite consensus disorder prediction 266 309 - -
Aed1g1985 875 SUPERFAMILY FYVE/PHD zinc finger 396 464 IPR011011 -
Aed1g1985 875 MobiDBLite consensus disorder prediction 849 867 - -
Aed1g1985 875 SUPERFAMILY Homeodomain-like 737 793 IPR009057 -
Aed1g1985 875 ProSiteProfiles 'Homeobox' domain profile. 733 793 IPR001356 GO:0003677
Aed1g1985 875 MobiDBLite consensus disorder prediction 98 112 - -
Aed1g1985 875 MobiDBLite consensus disorder prediction 493 764 - -
Aed1g1985 875 MobiDBLite consensus disorder prediction 744 764 - -
Aed1g1985 875 Gene3D - 736 805 - -
Aed1g1985 875 ProSitePatterns Zinc finger PHD-type signature. 407 458 IPR019786 -
Aed1g1985 875 CDD homeodomain 747 793 IPR001356 GO:0003677
Aed1g1985 875 MobiDBLite consensus disorder prediction 640 674 - -
Aed1g1985 875 MobiDBLite consensus disorder prediction 813 827 - -
Aed1g1985 875 MobiDBLite consensus disorder prediction 225 253 - -
Aed1g1985 875 MobiDBLite consensus disorder prediction 225 243 - -
Aed1g1985 875 MobiDBLite consensus disorder prediction 791 812 - -
Aed1g1985 875 PANTHER HOMEOBOX PROTEIN HAT3.1 160 842 - -
Aed1g1985 875 MobiDBLite consensus disorder prediction 790 875 - -
Aed1g1985 875 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 463 IPR013083 -
Aed1g1985 875 ProSiteProfiles Zinc finger PHD-type profile. 404 461 IPR019787 -
Aed1g1985 875 Pfam PHD-finger 406 461 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1985 Aed-Chr1 16820874 16826785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1985 265 843 Homeobox Transcription Factor Family AT3G19510 44.750 8.39e-135 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Aed1g1985 PHD 1.2e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1985 - - gmx:100306715 1295.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1985 1 16820874 16826785 Aed1g1985 1 16820874 16826785 ECH