Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1979 ATGGATGCCAAGGAGGAATATGATAATCTGACAACACCCACAGGGACCAGTTTCTCTCAGTTATTATTCGGCGATGACGACGAAGATTTTGAAAGTGCATTGGGTCTCGCTACCCTTTCACCTCTTTTCTCCATTCACAAGGCACCCCAAATGCTTTCTTTTGCCAACAATCACAACCAAGGTGCTGACGTTTCGCTTCCTCAGAAATCCGTCATCACTTCTAGTGACTCCTCTTCTGCTTCTGCTTCCTCCTGCAACCACACCAACTTCAATTCCTTACCTAAGTCTAATAGTTTGCAGAAAAAGCGGAATGGGATGGGACAAGAAGCAGTGGCCAAGGTTGGTGTTGGAGGCCAGAGACAAACTAAGAAAAACAAAGCAGAGAACCCCACCTCAACCGGGCATGCAAAGAAGAAGGAGAAGCTCGGGGAAAGAATTGCAGCGTTGCAACAGCTTGTTTCTCCCTTCGGCAAGACAGATACAGCATCGGTGCTTCACGAGGCCATGGGTTATATAAGATTTCTTCATGACCAAGTTCAGGTCCTGTGCTCCCCTTACCTGCAAAGGTTGCCTTCCTCGCACCATCAAAATCGGCATGTGATCGGGGACGGAGGTAACAATGAAGAGAAAGTGAAGAAGGAGTTAACGAGTAGGGGCCTTTGCTTGATCCCTGTAGGATGCACCGTACACGTGGCAGGTAGCAATGGTGCTGATTTTTGGTCACCAGCTGGTGCAATCAGCGAAGAAGCAGTGAAACGAAACCAATGA 768 0.4805 MDAKEEYDNLTTPTGTSFSQLLFGDDDEDFESALGLATLSPLFSIHKAPQMLSFANNHNQGADVSLPQKSVITSSDSSSASASSCNHTNFNSLPKSNSLQKKRNGMGQEAVAKVGVGGQRQTKKNKAENPTSTGHAKKKEKLGERIAALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQRLPSSHHQNRHVIGDGGNNEEKVKKELTSRGLCLIPVGCTVHVAGSNGADFWSPAGAISEEAVKRNQ 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1979 255 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 48 235 - -
Aed1g1979 255 MobiDBLite consensus disorder prediction 75 104 - -
Aed1g1979 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 187 IPR036638 GO:0046983
Aed1g1979 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Aed1g1979 255 PANTHER BASIC HELIX-LOOP-HELIX (BHLH) DNA-BINDING SUPERFAMILY PROTEIN-RELATED 48 235 - -
Aed1g1979 255 CDD bHLH_AtbHLH_like 137 182 IPR045239 -
Aed1g1979 255 MobiDBLite consensus disorder prediction 75 140 - -
Aed1g1979 255 Gene3D - 118 198 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1979 Aed-Chr1 16785531 16788108 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1979 137 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 53.271 4.96e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1979 - - gmx:100809317 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1979 1 16785531 16788108 Aed1g1979 1 16785531 16788108 ECH