Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1951 ATGGCAATCCATCACCACAATGAAAATGTCTCATCTGTCCTTGATGCCCTTTACTGTGATGAAGAAAGTGAAGTAGTCACATCTAACACTGATGATGGAGTATTGCACCACAGTACTGTAACTTCTCTTTTCCCTCTTCTCTTGTTGGAGCAAGACTTGTTCTGGGAAGATGAGGAACTTAACTCTCTCTTTTCCAAAGAGAAGCTTCAACATGATGAAGTCTATGGCTATAACAATGATGATGTGCATTTGTTGGAGTCTTGTCTCTCTGAGGCTCGTGGTGAGGCAGTGGAATGGATGCTTAAAGTGAATGCTCACTATGGATTCTCTGCTCTGACTGCAACACTGGCCGTTACTTATCTGGATAGGTTCCTTCTAAGCTTCCATTTTCAAAGGGAGAAGCCATGGATGATCCAGCTTGTGGCTGTCACTTGCATCTCTCTCGCTGCTAAAGTTGAAGAAACTCAAGTGCCTCTTCTCTTGGACCTTCAAGTGCAAGACACAAAGTACGTGTTTGAGGCAAAGACTATTCAGAAAATGGAGTTGCTGGTGTTGTCCACCCTCAAATGGAAGATGCACCCTGTGACCCCACTCTCGTTTCTAGATCACATCATAAGGAGGCTTGGATTGAAAACTCATCTTCACTGGGAGTTTCTCAGGCGCTGTGAACATCTTCTTCTGTCTCTACTTTTAGATTCAAGATTTGTTGGGTGTCTTCCTTCTGTGTTGGCCACAGCAACAATGCTGCATGTTATAGACCAGATTGAACACAGTGGTGGGATGGAATACAAAAATCAGCTTAGGAGTGTTCTCAAAATTAGCAAGGAGAAAGTAGATGAATGTTATAATGCGATTCTTCTCCAAGTCTCAAATGACGATAATAATAATAATAATAATAATAGGAAGCGGAAGTATGAGGAAATAATCCCAAGCAGCCCAAGTGGCGTAATAGATGCAGCATTTTGCTCTGATGGTTCAAACGATTCGTGGGCAGTGGGGTCAGAGCCTCTGTTCAAGAAGAGCAGAACCCAAGGACAACAAATGAAATTGTCACCACTTAACCGGGTCATTGTCGGAATTGTTGCCACCTCTCCTTAA 1098 0.4299 MAIHHHNENVSSVLDALYCDEESEVVTSNTDDGVLHHSTVTSLFPLLLLEQDLFWEDEELNSLFSKEKLQHDEVYGYNNDDVHLLESCLSEARGEAVEWMLKVNAHYGFSALTATLAVTYLDRFLLSFHFQREKPWMIQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQKMELLVLSTLKWKMHPVTPLSFLDHIIRRLGLKTHLHWEFLRRCEHLLLSLLLDSRFVGCLPSVLATATMLHVIDQIEHSGGMEYKNQLRSVLKISKEKVDECYNAILLQVSNDDNNNNNNNRKRKYEEIIPSSPSGVIDAAFCSDGSNDSWAVGSEPLFKKSRTQGQQMKLSPLNRVIVGIVATSP 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1951 365 SMART Cyclin_C_2 195 314 IPR004367 -
Aed1g1951 365 SMART cyclin_7 98 186 IPR013763 -
Aed1g1951 365 PANTHER CYCLINS 33 330 IPR039361 -
Aed1g1951 365 PANTHER CYCLIN D3.1 PROTEIN 33 330 - -
Aed1g1951 365 Pfam Cyclin, N-terminal domain 89 192 IPR006671 -
Aed1g1951 365 ProSitePatterns Cyclins signature. 93 124 IPR006671 -
Aed1g1951 365 SUPERFAMILY Cyclin-like 55 193 IPR036915 -
Aed1g1951 365 CDD CYCLIN 93 185 IPR013763 -
Aed1g1951 365 Gene3D - 87 193 - -
Aed1g1951 365 Pfam Cyclin, C-terminal domain 195 306 IPR004367 -
Aed1g1951 365 Gene3D - 194 285 - -
Aed1g1951 365 SUPERFAMILY Cyclin-like 196 305 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1951 Aed-Chr1 16617041 16618896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1951 1 286 Core Cell Cycle Gene Families AT4G34160 56.419 1.94e-106 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1951 K14505 - gmx:547740 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1951 1 16617041 16618896 Aed1g1951 1 16617041 16618896 ECH
Aed11g0234 11 1934558 1939670 Aed1g1951 1 16617041 16618896 ECH
Aed11g1440 11 18921632 18927845 Aed1g1951 1 16617041 16618896 PCT