Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1930 ATGGGGGATCACTTTGAGTTGCTGGTTGATCGATTGCTTACTGAGTCCACATTAGAAGCTGCACTCGAAAGCAGAAATAGATCATTGCTGTCTGCATCCTCTGTGGTGGTGAATGATGCGAAAATTGATCTCAGTTTGATGAAGATGGGTGTGGATGATATAAAATTTCCAGGGAAGGTGGTAGAATGCAGGATATGTCATGATGATGATGAAGATTCTAATATGGAGACACCCTGCTCCTGTTGTGGCAGTTTGAAGTATGCCCACCGCAGATGTATCCAACGATGGTGTAATGAGAAGGGTGACACCACCTGTGAGATATGTCACCAGCAATTCAAGCCTGGGTATACTGCTCCTCCGCCACTATTTCAGTTTGGACGTATTCCAATGAGTTTCAGGGGAAATTGGGAGATTTCAAGAAGAGACTTGAATAGTACTCATTTGGTTAGCATGGTCCCCACTGATCAGAACCTTACCACTTCTAACTATGATCAGTATTCAGCCTCTGCCACTGGAAGTTTGATTTGCTGTCGATCAATTGCTGTCATTTTCATGGTCCTTCTGATTTTAAGACATACACTTCCCCTTGTAATCAGTGGAAATAAGGAGTATTCTTTCCTACTCTTTTTGTTGTTGTTATTTCGGACTGCGGGAGTTGTTCTTCCCATATACTTCATGGTCAGAGCAGTGGCATTAATCCAGCGCCATCGAAGACAACATCGAGAGCATCTTAATGCCTCGGCCAGTTCATCTGACGATGAAAGTGAGCAAGCGGATTTGCAGCCTCAGCCTCAGCCTCATGTCATACATGTACTGTAA 819 0.4396 MGDHFELLVDRLLTESTLEAALESRNRSLLSASSVVVNDAKIDLSLMKMGVDDIKFPGKVVECRICHDDDEDSNMETPCSCCGSLKYAHRRCIQRWCNEKGDTTCEICHQQFKPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNSTHLVSMVPTDQNLTTSNYDQYSASATGSLICCRSIAVIFMVLLILRHTLPLVISGNKEYSFLLFLLLLFRTAGVVLPIYFMVRAVALIQRHRRQHREHLNASASSSDDESEQADLQPQPQPHVIHVL 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1930 272 ProSiteProfiles Zinc finger RING-CH-type profile. 55 115 IPR011016 GO:0008270
Aed1g1930 272 PANTHER OS01G0121200 PROTEIN 1 267 - -
Aed1g1930 272 Pfam RING-variant domain 63 108 IPR011016 GO:0008270
Aed1g1930 272 SMART ringv_2 62 109 IPR011016 GO:0008270
Aed1g1930 272 Pfam Protein of unknown function (DUF3675) 114 230 IPR022143 -
Aed1g1930 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 118 IPR013083 -
Aed1g1930 272 MobiDBLite consensus disorder prediction 243 272 - -
Aed1g1930 272 CDD RING_CH-C4HC3_MARCH 63 109 - -
Aed1g1930 272 SUPERFAMILY RING/U-box 61 113 - -
Aed1g1930 272 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 267 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1930 Aed-Chr1 16491957 16495517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1930 62 109 C3H Transcription Factor Family AT2G37950 49.020 9.99e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1930 - - gmx:100792304 514.998