Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1919 ATGCTAGGTTTGCTTCTGCTTCGCCGGTTAGACGCCGTCGAAGTCGATCAAGATCATTACCAAGGTCCAGGAGAACTCGTTCCAGTCATGGTTAAGTTTGTTCCAGGAGAAGTCCAAGTCCAAGTCCAAGTCGATCAAGATCATTATCAAGGTCCAGGAGAACTCGTTTCAGGAGAAGTCCAAGTCCAAGTCAATCAAGATCATTATCAAGGTCCAGGAGAACTCGTTACAGTGATGGTTGAGTTTGTTCCAGGAGAAGTCGAAGTCGATCAAGATCATTATCGAGGTCCAGGAGCAGTCGAAGTCGATCAAGATCATTATCGAGGTCCAGGAGCAGTCGAAGTCGATCAAGATCAAGATCATTATCGAGGTCCAGGAGGACTCGTTTCAGGAGAAGTCCAAGTCGATCAAGATCATTATCAAGGTCCAGGAGAACTCGTTTCAGGAGAAGTCCAAGTCGAAGTCGAAGTCGATCAAGATCATTACCATGGTCCAGGAGAACTCGTTACAGTGATGGTTAAGTTTGTTCCAGGAGAAGTCGAAGTCGAAGTCGATCAAGATCATTATCGAGGTCCAGGAGAACTCGTTCCAGTTTGTTCCAGGAGTCAAGATTATGCTGATGTGGAGAATCCTGGAAATAATTTGTATGTTACAGGCTTGCCCACAAGGATGACCAACACTGATCTTCGCAGGCTTTTCGGTAAAGAGGGAAAGGTTGCCAACTGCCGCTTGCTAAAAATTCCTTGTACAAAACAACATCGTGGATTTGGTTTTGTCACTATGGAAACTATTAACGAAGCTGAACGCTGTATCAAGAATTTGAACAACACTGTATTTGATGGTCGGCGGATAACTGTGGCAAAGGCAAAGAGAAAGTGTGGCAGGATTCCAACTCCTGGCAAATACTGTGGTCCAAGTTCAAGATTTATACAGGGACTGGGAGGGAGACAATCTCGTGGCTACGCACCTAAGCGAAGGAAGGATAGAGATTATCCTTCAAGGGACTGGCGAGGAAGATCTCGTTCTCGTTCTCCACACGGTAGGAGGCAGAGGAGGAGGGATTAG 1065 0.461 MLGLLLLRRLDAVEVDQDHYQGPGELVPVMVKFVPGEVQVQVQVDQDHYQGPGELVSGEVQVQVNQDHYQGPGELVTVMVEFVPGEVEVDQDHYRGPGAVEVDQDHYRGPGAVEVDQDQDHYRGPGGLVSGEVQVDQDHYQGPGELVSGEVQVEVEVDQDHYHGPGELVTVMVKFVPGEVEVEVDQDHYRGPGELVPVCSRSQDYADVENPGNNLYVTGLPTRMTNTDLRRLFGKEGKVANCRLLKIPCTKQHRGFGFVTMETINEAERCIKNLNNTVFDGRRITVAKAKRKCGRIPTPGKYCGPSSRFIQGLGGRQSRGYAPKRRKDRDYPSRDWRGRSRSRSPHGRRQRRRD 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1919 354 SUPERFAMILY RNA-binding domain, RBD 204 318 IPR035979 GO:0003676
Aed1g1919 354 MobiDBLite consensus disorder prediction 304 354 - -
Aed1g1919 354 PANTHER OS08G0385900 PROTEIN 200 352 - -
Aed1g1919 354 Gene3D - 199 354 IPR012677 -
Aed1g1919 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723
Aed1g1919 354 MobiDBLite consensus disorder prediction 321 340 - -
Aed1g1919 354 SMART rrm1_1 214 287 IPR000504 GO:0003723
Aed1g1919 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 284 IPR000504 GO:0003723
Aed1g1919 354 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 200 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1919 Aed-Chr1 16439415 16442782 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1919 212 316 Eukaryotic Initiation Factors Gene Family AT2G23350 32.075 1.23e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1919 K12897 - gmx:100798472 180.259