Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1904 ATGGGTTTGCAAAACCAATTAAACGACGTGTCGTCGGGTTCGATTCCGCTGCTGGTGTTGGCGCAGATAGCTACTTGCGTCAACTACCTTCGCTCCATGCTTTTCGCGCTTTTGCAATCCCTAGGTCTCAGCCGATTCCACACCGACCAGATCGTCGACGACCGCTTCCTCGCCGCCGTCGGATCCGGCCTCGCCGGACTCATCATGCTCTCCGATCAGCTCACTCTCAATAACCAATTCTTCCACCACCACCACCACCACGCCGGTGCCGCCCACGACCACCCTTGCGTGGTGTGCCAGGCCACCTTCGAGGAAGGCGACCAGGTCCGCATGCTCCCCTGCCGCCACGTCTTCCACCGCCGCTGCTTCGACGGCTGGCTCCACCACTACAAGTTCAACTGCCCCCTCTGCCGCTCTCCGCTCTTCTCCGACGAGCGCGTGGCCTTCACCGAGCGCCGCCTCGGCCAGCAACTCATCTCTTGGTTCTCCCTTCACTGA 498 0.6124 MGLQNQLNDVSSGSIPLLVLAQIATCVNYLRSMLFALLQSLGLSRFHTDQIVDDRFLAAVGSGLAGLIMLSDQLTLNNQFFHHHHHHAGAAHDHPCVVCQATFEEGDQVRMLPCRHVFHRRCFDGWLHHYKFNCPLCRSPLFSDERVAFTERRLGQQLISWFSLH 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1904 165 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA2A 1 163 - -
Aed1g1904 165 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 163 - -
Aed1g1904 165 SMART ring_2 96 137 IPR001841 -
Aed1g1904 165 Pfam Ring finger domain 96 138 IPR001841 -
Aed1g1904 165 SUPERFAMILY RING/U-box 79 144 - -
Aed1g1904 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 147 IPR013083 -
Aed1g1904 165 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1904 Aed-Chr1 16328834 16329331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1904 1 165 C3H Transcription Factor Family AT1G15100 49.091 1.48e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1904 K16282 - gmx:100797628 301.597