Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1880 ATGAGTTCAGTTTATGAATTTGTATTATTGCTTCTGTTTTGTCGCCTCATGGTGGCTGCGAACCAAGGAAACTGTCCACCTAAGTTTCCTTGTGGATATCTTGGCAATATCAGTTTCCCTTTTACTAAATCAGAAAGCCAGGACTGTGGCTTATTGCCCATTAGCAATTGTGATCATAATGGTAAGTCCAAAATGATCCAATTACAGAAAAATGGAGCATCGTTTCATCTTATACGCGTAGCTCATCTTCAGCGTAATTCTCTCATAACTTTTCAATTTAGAGACGATAATCTCTATGACCTTCTGCAATCGGAAAGTTGTGAAGCTTTCAGAAACAATTATACTATTCCTCACAGTTTTCACTTTGCTGATTTTCGTATCGAATACAACACAACCCTGTTCAGGTGCAACCGCACCCTCCACCCCAACCCTCCCAAAAACATGCTTAAGTATACAAACTGCAGTGACTACGATCTATACTACAAGCACATCGTCACAGCTGAAGATGCGTCTCCGAGTTCTTTGAGAGCATGTACAAAGGTCCAGCTACCAATTAAAGACGTGCCTGACGCTAACAACCCATTCACATTCATAACTGCGGATATCTTGGTCGTAGTAGACTTAAATCACGAATGTGCAGATTGTTACTATCGCAAAGGAGGGCAGTGCCAACTTGACAGCAAAGAGAGACTTTGTTGTGTCAATGGTTTAGGTATTGGAATCCCATGCATGTTGGTAATTGGGCTGCTATTTTTCTGTCTACTCTACAAACGAAAACATGCTACCTCAGGTGGACAATTGGAGTCAAGAGATTCATATTCTGATTCCTCCTCAAATCCTCATCAAGCAAGTAGTAGTGAGTACTATGGAGTTCCACTCTTCTCTTACGAGCAGCTTAAACAAGCGACAAGCAATTTCGACGATACTAAAGAACTTGGAGATGGTGGCTTCGGCACTGTCTACTATGGGAAACTCCCAGATGGACGTGAAGTTGCCGTGAAGCGCTTATACGAGCACAACTGGAAGCGAGTAGAACAGTTCATGAACGAAGTTAGGATCCTCACACGTTTGCGTCACAAAAATCTCGTGTCACTATACGGCTGCACTTCACGGCACAGCCGTGAACTCCTGCTTGTGTATGAATACATTTCAAACGGCACCGTAGCGTGTCATCTTCACGGCAGATTAGCGAAGCCTGGCTCGCTACCGTGGTCTACAAGAATGAGAATTGCCATAGAGACTGCTAATGCATTGGCATATCTCCACGCCTCTGACATCATTCACCGTGACGTGAAAACAAACAACATTCTCCTCGAAAACAACTTTTGTGTTAAGGTAGCAGATTTTGGTCTTTCAAGAGATCTTCCAAACGATGTCACACATGTTTCCACAGCTCCACAAGGGTCCCCCGGTTACCTTGACCCTGAATATTACAATTGCTATCAGCTTACAAGTAAGAGTGATGTGTATAGTTTTGGGGTTGTGCTTATTGAGCTAATATCATCAAAGCCTGCAGTTGATATGAACAGGAGCAGGGATGAGATTAATTTGTCTAATCTGGCCATAAACAAGATTCTGAAAAGTGCATTTAGTGAACTGGTTGATCCTTCTCTTGGTTTTGATTCAGATTGTGGGGTTAAGAGGATGATAGTTTCAGTGGCAGGGTTAGCTTTTCAGTGTTTGCAAAGGGAAAAGGATTTGAGACCTTCCATGGATGAAGCGTTGGATGAACTGAAGAGAATTGAGAGTGAGGTTCAAATCGAGGGTAGTTGTGCACATTCACCACTACCACCACCAGCCTCACCAGAGTGGGAAGAAGTTGCATTGTTGAAGAATATGAAGCCTACTTCCCCAAACACTGTTACTGATAAATGGGAAAGTAAATGTACTACGCCTAATGTCAGTGGTTAA 1911 0.4275 MSSVYEFVLLLLFCRLMVAANQGNCPPKFPCGYLGNISFPFTKSESQDCGLLPISNCDHNGKSKMIQLQKNGASFHLIRVAHLQRNSLITFQFRDDNLYDLLQSESCEAFRNNYTIPHSFHFADFRIEYNTTLFRCNRTLHPNPPKNMLKYTNCSDYDLYYKHIVTAEDASPSSLRACTKVQLPIKDVPDANNPFTFITADILVVVDLNHECADCYYRKGGQCQLDSKERLCCVNGLGIGIPCMLVIGLLFFCLLYKRKHATSGGQLESRDSYSDSSSNPHQASSSEYYGVPLFSYEQLKQATSNFDDTKELGDGGFGTVYYGKLPDGREVAVKRLYEHNWKRVEQFMNEVRILTRLRHKNLVSLYGCTSRHSRELLLVYEYISNGTVACHLHGRLAKPGSLPWSTRMRIAIETANALAYLHASDIIHRDVKTNNILLENNFCVKVADFGLSRDLPNDVTHVSTAPQGSPGYLDPEYYNCYQLTSKSDVYSFGVVLIELISSKPAVDMNRSRDEINLSNLAINKILKSAFSELVDPSLGFDSDCGVKRMIVSVAGLAFQCLQREKDLRPSMDEALDELKRIESEVQIEGSCAHSPLPPPASPEWEEVALLKNMKPTSPNTVTDKWESKCTTPNVSG 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1880 636 Gene3D Phosphorylase Kinase; domain 1 277 382 - -
Aed1g1880 636 SMART serkin_6 306 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1880 636 MobiDBLite consensus disorder prediction 266 285 - -
Aed1g1880 636 MobiDBLite consensus disorder prediction 265 285 - -
Aed1g1880 636 SUPERFAMILY Protein kinase-like (PK-like) 287 586 IPR011009 -
Aed1g1880 636 MobiDBLite consensus disorder prediction 615 636 - -
Aed1g1880 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Aed1g1880 636 PANTHER WALL-ASSOCIATED KINASE-LIKE PROTEIN 14 635 - -
Aed1g1880 636 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524
Aed1g1880 636 ProSiteProfiles Protein kinase domain profile. 306 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1880 636 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 14 635 IPR044652 -
Aed1g1880 636 Gene3D Transferase(Phosphotransferase) domain 1 383 591 - -
Aed1g1880 636 Pfam Protein tyrosine and serine/threonine kinase 309 511 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1880 Aed-Chr1 16126429 16130561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1880 29 636 Receptor kinase-like Gene Family AT1G25390 47.792 2.10e-174 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Aed1g1880 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1880 - - gmx:100305407 977.237