Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1878 ATGGAAAAGGACAATGTTTACTTGACAGCAAAGGAAAACTCAATTGCGCCAAAGGTTAAAAAGTGTGTAGGGGAAAAGGAATACAATAAAAAATTGGCGCGGAAGTTAGGACTAGGTATTGGACTCCCTGGGATTATTATACTTGGGTTACTGATTATATGGCATCGCAAACCAAGATGGCTGTCTGGTTTCTACTCAAATCCAAATCAAGAGAGTGCGAGTATCTACTTTGGGGTGCCTGTGTTCACCTATAAGGATCTTGAAATAGCAACAAAACGTTTTGATCGTTCAAAAGAACTGGGAGAAGGAGGATTTGGGATTGTTTACTATGGAAAACTCAAGGATGGTCGTGAAGTTGCTGTCAAGCGCCTATACGAGAACAACTACAAGCGAGTAGAACAGTTCATGAATGAAATCAAGATCCTCACGCGCTTGCGCCACACAAATTTAGTGTCTCTTTATGGCTGCACTTCACGACAAAGCCATCATGATGAGGTGAAATTGTTGAGGGGGAATGTGAAGTTGGTTTCTTCGCCAAAGGCTGTCACAGATAAATGGGATAGCGAATCCACCACTCCTAATGTTAGTGATCAATCGCCAACCCAAATCTAA 612 0.4199 MEKDNVYLTAKENSIAPKVKKCVGEKEYNKKLARKLGLGIGLPGIIILGLLIIWHRKPRWLSGFYSNPNQESASIYFGVPVFTYKDLEIATKRFDRSKELGEGGFGIVYYGKLKDGREVAVKRLYENNYKRVEQFMNEIKILTRLRHTNLVSLYGCTSRQSHHDEVKLLRGNVKLVSSPKAVTDKWDSESTTPNVSDQSPTQI 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1878 203 Pfam Protein tyrosine and serine/threonine kinase 97 161 IPR001245 GO:0004672|GO:0006468
Aed1g1878 203 SUPERFAMILY Protein kinase-like (PK-like) 67 159 IPR011009 -
Aed1g1878 203 Gene3D Phosphorylase Kinase; domain 1 65 167 - -
Aed1g1878 203 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 36 163 IPR044652 -
Aed1g1878 203 ProSitePatterns Protein kinases ATP-binding region signature. 100 122 IPR017441 GO:0005524
Aed1g1878 203 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 36 163 - -
Aed1g1878 203 MobiDBLite consensus disorder prediction 184 203 - -
Aed1g1878 203 ProSiteProfiles Protein kinase domain profile. 94 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1878 Aed-Chr1 16114748 16116743 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1878 21 161 Receptor kinase-like Gene Family AT1G25390 50.993 1.98e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Aed1g1878 PK_Tyr_Ser-Thr 4.1e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1878 - - gmx:100790240 199.904