Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1849 GGGTGTGGAGAACAAAATCGAGGTGTCTATAACAAAATTTCAACCCTAACATTCATCCCCTTCCTCTCTACTCCGCACGACCACCATCCCTTCTTCTCCTTCATTCCGAGTTGCGTCACCGCTGCTCGCCCCACCAACCACCACTACGCGCTCGCGCCGCCACCGACACCACCGCGTTGTGCCTCCTGCGCGCAGCTTCTTTACGTCCGTCGCACAACCTCGCGACCCCACTACCGTCGTCACGTTTCCCTGCGACAGCACCGCGCCGCCGCGCCTCTTCTCCGTGTCGCTCTGACAGCGTACGCGACCCCATCACCGCACCACCACATCCCTTCTACTCCTTCATTCCGTGAGGAGAAAGCAATGGACGAGGGTAAGCATAAATCGAGGAAAGAAAGTCATGAGGTGAAAGATGGGGATTCTAAGAGGAGTCACCGTGACCGTGATAGAACTGGAGAAAAGGCTAAGGATAAAACCGATGGGAAGCACAGGGATAGGGAGAAGAGGGATCGTGAGTCCCGAAGACACGAGAGAGAGAGGAGTACAGATTCTGAAGACAGGTATGATAGAGACAAGGAGAAGCGCAAGGATAAAGATAAGGATGTGGACAGGGAAAGAGGCCGAGACAAGAAAAGGGAAAGGGAAGACATGGAAAGGGAGAGAACAGACAGAGTAAGGGAGAAGGAAAGAGAGAGGGAGAGAAAAGAGGATAAGGAGAGGATCAGAGAGAGAGAAAGGGAAAAGGAAAGGAGGGATCATGAGAGAGAAAAGAAAAAGGAAAGAGAAAGGGGGAGGAGAGCACGAGAGAGGGAGAAGCGTAAGGAAGTTGATAGTGATTATAGTGATGGTGAATCTAAGGAGAGGGATAGAAAGCGGCATAGGAAAGAGGATGGTGATTACAAGAAAAGAGAGAGGGAAAGGAGTGTCAGCAAGCCAAGCAGGAAATCTGAGGAACATGAAGGAAGCCCTAAAAAAAAGAGTGGTGGAGATGATTCAGATACCAAAGACGAAGACAAAAAACCTACCCGTGAAGAGGAGATGGAGGATGAGCAAAAGAGGTTGGATGAAGAAATGGAAAAGCGGAGGAGGAGAGTTCAAGAGTGGCAAGAGCTAAGGAGGAAGAAGGAAGAAGCAGAAAGAGAAAAACACGGTGAAGCAAGTGCTACCGAACCTGAGTCCGGAAAGACCTGGACGCTTGAAGGGGAATCTGATGATGAAGAAGGACTAGGTACTGGGAAGCAGACAGGTATGGATGTAGATGAAGATGACATACCTGCTGATAAGGAACCTAAGGATGCAATGGTGGTAGACATTGATAATGGGACAATTGCATCTGATTTACATGATGGAACTGCTGGTGCTCTTGAAGATGATGAGGAAATAGATCCATTGGATGCTTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTAAAAAATACTGTGACATCGTCACTTTCTGATCAATCTGTTGATGTAAAACCCAAGGATAAAGGGAATGAGCAAAGTCGTGGTGCACAGTCAAGGAAAGGTTCAAGTAAGGCTATTGGCAGAATAATTCCTGGTGAAGAGTCTGACTCAGATTATGCAGATGATGAAGTTGAGAAGGATCCATTGGATGAAGATGATGATGAGTTCATGAAAAGAGTGAAGAAGACAAAAGCCGAGAAGCTTTCTTTAGTTGACCACTCAAAGATTGACTATGAACCATTCAAGAAAAACTTTTATATTGAGGTGAAGGAGATCTCGAAGATGACTCCTGAAGAAGCTGCAGTATATAGGAAGCAGTTGGAGTTGAATATACGTGGAAAGGATGTGCCAAAGCCTATAAAATCATGGCACCAGACTGGACTTGCTAGCAAAATTTTGGAGACAATAAAGAAGATGAACTTTGAAAAGCCGATGCCTGTTCAAGCTCAGGCACTCCCTGTAATCATGAGAGGTCGAGATTGCATAGGGATTGCTAAAACTGGGTCTGGAAAAACACTTGCTTTTGTTCTGCCAATGCTGAGGCATATTAAGGATCAGCCACCAGTTGTCGCCGGAGATGGACCTATTGGGCTCATTATGGCCCCTACAAGGGAACTTGTTCAACAGATTCACAGTGATATAAAAAAATTTGCTAAGGTACTGGGTATCAGGTGTGTGCCTGTGTATGGAGGCTCCGGTGTTGCTCAACAAATTAGTGAGTTGAAACGTGGTGCTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTTTGCACCAGTAGTGGAAAAATAACTAACTTGCGAAGAGTCACTTATCTGGTCATGGATGAGGCTGATCGAATGTTTGACATGGGCTTTGAACCTCAAATCACACGAATTGTTCAGAATATTCGTCCTGATCGTCAAACAGTTCTGTTCTCTGCTACTTTCCCCCGTCAGGTTGAAATTTTGGCTCGTAAGGTTTTGAATAAACCTGTTGAAATACAAGTTGGTGGGAGGAGTGTTGTGAACAAAGACATAACACAGCTAGTTGAAGTGAGGCCAGATAATGAAAGGTTCCTTAGACTCTTAGAAATATTGGGGGAATGGTATGAGAAAGGAAAGATTTTGATATTTGTCCACTCACAGGAGAAATGTGATAGTTTGTTCAAGGATCTGCTCAGGCATGGTTATCCATGCCTTTCTCTTCACGGGGCTAAAGACCAGACAGACCGTGAATCCACGATATCTGATTTTAAAAGCAATGTCTGCAATTTGTTGGTTGCAACCAGTATTGCTGCCAGGGGATTAGATGTAAAGGAGCTTGAACTAGTGATCAATTTTGATGTTCCTAACCACTATGAAGATTATGTACATCGTGTTGGGCGCACTGGACGAGCTGGTCGAAAGGGTTGTGCCATTACATTTATTTCTGAGGAAGAGGCAAGATATGCACCTGATCTGCTGAAAGCCTTGGAACTATCTGAGCAGATTGTTCCAAATGATCTGAAAGCTCTTGCTGATAGCTTTATGGCAAAAGTGAATCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGAAGTGGCTTTAAATTTAACGAAGAGGAAGATGAGGTGAGGAGAGCAGCAAAGAAAGCACAAGCCAAGGAATATGGGTTTGAAGAAGAGAAATCAGATTCTGAAGATGAAGATGAAGGTATTAGGAAGGCAGGAGGTGATATCTCACAGCATTCTGCTTTTGCTCAGATTATTGCTGCCACTAAAGCGAGTGCTCCTGCATTGCCTACTCCAATACTCCTACCATCCTTACCAGTCTTGCCTGGGACAGGGTTACCTCTTCCTGCAAATGATGGAGCAGCTCGAGCAGCAGCAATAGCTGCTCTAAACTTGCAGGACAAGTTAGATAAAATACGTTCAGAAGCTTTACCAGAGCATTACGAGGCTGAGTTGGAAATAAATGATTTCCCCCAGAATGCTCGCTGGAAAGTTACACACAAGGAAACTTTGGGCCCTATTTCTGAATGGAGTGGAGCTGCCATTACCACCAGAGGGCAGTTTTTCCCACCTGGCAAAATCCCAGGACCTGGGGAACGCAAACTGTACTTGTTCATTGAAGGTCCTACTGAGCATTCTGTTAAGTCAGCTAAAGCAGACTTGAAGCGAGTTTTGGAAGACATCACAAATCAGGCTTTGCAACTTCCTGGTGGAACTCAACCGGGCAAATACTCTGTTGTGTAG 3699 0.4544 GCGEQNRGVYNKISTLTFIPFLSTPHDHHPFFSFIPSCVTAARPTNHHYALAPPPTPPRCASCAQLLYVRRTTSRPHYRRHVSLRQHRAAAPLLRVALTAYATPSPHHHIPSTPSFREEKAMDEGKHKSRKESHEVKDGDSKRSHRDRDRTGEKAKDKTDGKHRDREKRDRESRRHERERSTDSEDRYDRDKEKRKDKDKDVDRERGRDKKREREDMERERTDRVREKERERERKEDKERIREREREKERRDHEREKKKERERGRRAREREKRKEVDSDYSDGESKERDRKRHRKEDGDYKKRERERSVSKPSRKSEEHEGSPKKKSGGDDSDTKDEDKKPTREEEMEDEQKRLDEEMEKRRRRVQEWQELRRKKEEAEREKHGEASATEPESGKTWTLEGESDDEEGLGTGKQTGMDVDEDDIPADKEPKDAMVVDIDNGTIASDLHDGTAGALEDDEEIDPLDAFMNSMVLPEVEKLKNTVTSSLSDQSVDVKPKDKGNEQSRGAQSRKGSSKAIGRIIPGEESDSDYADDEVEKDPLDEDDDEFMKRVKKTKAEKLSLVDHSKIDYEPFKKNFYIEVKEISKMTPEEAAVYRKQLELNIRGKDVPKPIKSWHQTGLASKILETIKKMNFEKPMPVQAQALPVIMRGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPDNERFLRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLLKALELSEQIVPNDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEEKSDSEDEDEGIRKAGGDISQHSAFAQIIAATKASAPALPTPILLPSLPVLPGTGLPLPANDGAARAAAIAALNLQDKLDKIRSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWSGAAITTRGQFFPPGKIPGPGERKLYLFIEGPTEHSVKSAKADLKRVLEDITNQALQLPGGTQPGKYSVV 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1849 1232 Gene3D - 564 821 IPR027417 -
Aed1g1849 1232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 684 970 IPR027417 -
Aed1g1849 1232 MobiDBLite consensus disorder prediction 482 545 - -
Aed1g1849 1232 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 849 993 IPR001650 -
Aed1g1849 1232 MobiDBLite consensus disorder prediction 112 389 - -
Aed1g1849 1232 Gene3D - 822 996 IPR027417 -
Aed1g1849 1232 MobiDBLite consensus disorder prediction 104 433 - -
Aed1g1849 1232 MobiDBLite consensus disorder prediction 527 542 - -
Aed1g1849 1232 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 767 775 IPR000629 -
Aed1g1849 1232 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 275 1067 - -
Aed1g1849 1232 MobiDBLite consensus disorder prediction 1028 1042 - -
Aed1g1849 1232 Coils Coil 344 381 - -
Aed1g1849 1232 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 643 821 IPR014001 -
Aed1g1849 1232 MobiDBLite consensus disorder prediction 397 433 - -
Aed1g1849 1232 MobiDBLite consensus disorder prediction 1028 1057 - -
Aed1g1849 1232 Coils Coil 214 270 - -
Aed1g1849 1232 SMART ultradead3 631 836 IPR014001 -
Aed1g1849 1232 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 612 640 IPR014014 GO:0003724
Aed1g1849 1232 Pfam Helicase conserved C-terminal domain 846 954 IPR001650 -
Aed1g1849 1232 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 275 1067 - -
Aed1g1849 1232 Pfam DEAD/DEAH box helicase 637 808 IPR011545 GO:0003676|GO:0005524
Aed1g1849 1232 CDD SF2_C_DEAD 833 963 - -
Aed1g1849 1232 SMART helicmild6 873 954 IPR001650 -
Aed1g1849 1232 CDD DEADc_DDX46 602 822 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1849 Aed-Chr1 15836653 15842278 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1849 609 974 Eukaryotic Initiation Factors Gene Family AT3G19760 32.432 4.01e-58 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1849 K12811 - gmx:100784306 1758.81