Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1841 ATGAAGGTTTTCGTTAAGACTCTCAAAGGCACTCACTTCGAAATCGAAGTCAAGCCGCAAGACACGGTTTCTGAAGTGAAGAAAATTATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTAATTCATCAAGGGAAAGTTCTTAGAGATGCTACTTCCTTGGAGGAGAATAAAGTAGCTGAAAGTAGTTTCATTGTAATTATGCTATCGAAGAGTAAGAGCACATCTGGTGAAGGATCTACTACTTCGACTGCACCATCCACCAAGACAAGTACAGCTCCTGCTTCAACCCCTCCAGTGTCAGTAGTGCCTCAAGCACCTGCTCCTGCTGTAACTGGGGCACCGCTTGCATCTGTTACTGCACCTGTTTCTTCACCTTCTCCGGCTCCAGCCCCAGCCGCAGCCCCAGCTCCTGCTCCTATATCTTCAGGAACTGCTGTGGAAGGGTCTGATATCTATGGGCAGGCTGCATCCAATCTGGTTGCTGGAAGCAACTTGGAGGGAACAGTTCAGCAAATTCTTGATATGGGTGGAGGGAGTTGGGACAGGGATACTGTTGTCCGTGCTCTTCGTGCTGCCTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATACAGGTATCCCTGAGCAAGCTGAAGCTCCAGCTGTAGCCCAAGTGCCTGCAGGTGCTCAACCTGCAAATCCTCCTGCTGCTGCTCCACAAACAGCACAACCTGCTCCAGTTACCTCAGCTGGACCTAATGCTAATCCTTTAGACCTTTTTCCCCAGGGTCTCCCCAATGTGGGTTCTGGTGCTGCTGGTGCTGGCTCATTAGATTTTCTACGCAACAGTCAACAGTTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGAGACCATCAAGCTGATTTCCTTCGCCTGATAAATGAACCTCTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTTTGCTTGTAACAAAAATGAAGAATTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGAGGAACAATAG 1116 0.474 MKVFVKTLKGTHFEIEVKPQDTVSEVKKIIETVQGADVYPAAQQMLIHQGKVLRDATSLEENKVAESSFIVIMLSKSKSTSGEGSTTSTAPSTKTSTAPASTPPVSVVPQAPAPAVTGAPLASVTAPVSSPSPAPAPAAAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTVQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPAVAQVPAGAQPANPPAAAPQTAQPAPVTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFEEQ 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1841 371 Pfam XPC-binding domain 277 332 IPR015360 GO:0003684|GO:0006289|GO:0043161
Aed1g1841 371 Gene3D - 1 80 - -
Aed1g1841 371 MobiDBLite consensus disorder prediction 79 104 - -
Aed1g1841 371 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 169 212 IPR015940 -
Aed1g1841 371 CDD UBA1_Rad23_plant 165 214 - -
Aed1g1841 371 Gene3D - 164 214 - -
Aed1g1841 371 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Aed1g1841 371 MobiDBLite consensus disorder prediction 123 150 - -
Aed1g1841 371 PANTHER UV EXCISION REPAIR PROTEIN RAD23 331 370 - -
Aed1g1841 371 Gene3D - 268 329 IPR036353 GO:0003684|GO:0006289|GO:0043161
Aed1g1841 371 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 334 - -
Aed1g1841 371 SUPERFAMILY UBA-like 332 368 IPR009060 GO:0005515
Aed1g1841 371 SMART uba_6 326 363 IPR015940 -
Aed1g1841 371 SMART uba_6 171 211 IPR015940 -
Aed1g1841 371 MobiDBLite consensus disorder prediction 224 252 - -
Aed1g1841 371 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 334 - -
Aed1g1841 371 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 331 370 - -
Aed1g1841 371 SUPERFAMILY UBA-like 168 219 IPR009060 GO:0005515
Aed1g1841 371 TIGRFAM rad23: UV excision repair protein Rad23 1 335 IPR004806 GO:0006289
Aed1g1841 371 Pfam UBA/TS-N domain 333 361 IPR015940 -
Aed1g1841 371 Pfam UBA/TS-N domain 174 209 IPR015940 -
Aed1g1841 371 SMART CBM 275 318 IPR006636 -
Aed1g1841 371 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Aed1g1841 371 SMART ubq_7 1 75 IPR000626 GO:0005515
Aed1g1841 371 SUPERFAMILY XPC-binding domain 274 337 IPR036353 GO:0003684|GO:0006289|GO:0043161
Aed1g1841 371 Gene3D - 330 368 - -
Aed1g1841 371 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 318 364 IPR015940 -
Aed1g1841 371 MobiDBLite consensus disorder prediction 79 111 - -
Aed1g1841 371 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Aed1g1841 371 CDD Ubl_Rad23 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1841 Aed-Chr1 15752721 15757248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1841 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 36.486 1.45e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1841 K10839 - gmx:100814162 514.998