Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1821 ATGCTCCCCATCACCTGCATTCTTTTAATGTGCTTTCTTCTAATAAGTTCATTCTCACCCCAAATCAACGCTCTCCTCAACTTCACCGTACCCCACCAAGTCCCTCACCCTTACCCAGAATCCGTCGTCCATGAACTCCAACGGAAGGTGAATGCCTCACTATGGAGAAGGGAAATGCTGTCCAAGGACCAGTCCACGTGTGTCACCGGAAACCCCATCGACGACTGCTGGCGTTGCGACCCTAACTGGGCGGCGGACCGTCAGAAGCTGGCGGAGTGCGGCATCGGGTTCGGCAAAGACGCCATGGGCGGCAAGGGCGGCCAGATCTACATCGTAACGGACTCCTCCGACCGCGACCCTGCCAACCCCGTTCCCGGCACTCTCCGTCATGCCGTAATCCAAGACGAGCCTCTCTGGATCGTGTTCGCCGCTGACATGACCATCAACCTGAAACACGAGCTGATCTTCAACAGCTACAAGACGGTGGACGGGCGCGGCGCCAACGTCCACGTCACCGGCCACGGCTGCATCACACTCCAGTACGTCTCCAACGTCATCATCCACAACATCCACGTGCACCACTGCACGCCCTCGGGAAACACCAACATACGCGCGAGTCCGACGCACGTTGGGTGGAGAGGCAAATCGGACGGCGACGGGATCTCCATCTTCGGGTCACGGAAGATCTGGATCGATCATTGCTCCCTCTCTTATTGTACTGACGGTCTCATCGATGCGATTATGGGGTCCACCGGGATTACTATTTCGAACAGCCACTTCGCGCACCACGATGAGGTCATGCTCTTGGGGCACGACGATAAGTATTTGCCGGATAGGGCTATGCAGGTTACCATTGCGTTTAATCACTTCGGCGAGGGTTTGGTGCAGCGCATGCCACGCTGTAGGCGCGGTTATATCCACGTTGTTAATAACGATTTCACGCAGTGGCAGATGTATGCTATCGGAGGTAGCGCTAACCCCACCATCAACAGCCAGGGTAACCGATACACTGCTCCCGGCGACCCTGATGCTAAAGAGGTGACGAAGCGCGTGGAGACAGACGATAGAGAGTGGAGTGGTTGGAATTGGAGGACGGAAGGGGATATAATGGTAAATGGAGCATTCTTTGTACCGTCTGGTGGAGGGCTGAGTGCACAGTACGCAGAGGCCACCAGTGTGCAAGCCAAATCCGCTGTGCAAATTGACCAGCTCACTATGTACTCCGGTGTCTTCGGTGATCCCAGGGATAATGGGGATTTATATCCCGGTTTCAACGGTGGTGGGACCGTGACCGGAGCCACCAGCAAAGGCAACACTGAGGGGTCCAGCAGTGACGATGGAGACTTCTTCGGGATGATATTCAAAGGTAGCAGCAGCAGCAGCCAAGCAGCGCCACCATCACCCTCTTCGTCCATTGTATTTGTTTCAACCTTTTTGTCTCTTTTCATTATTTTTATTTTGGACACTACCACCAACCATGCCATTCTATTATCATTACTATGA 1503 0.5429 MLPITCILLMCFLLISSFSPQINALLNFTVPHQVPHPYPESVVHELQRKVNASLWRREMLSKDQSTCVTGNPIDDCWRCDPNWAADRQKLAECGIGFGKDAMGGKGGQIYIVTDSSDRDPANPVPGTLRHAVIQDEPLWIVFAADMTINLKHELIFNSYKTVDGRGANVHVTGHGCITLQYVSNVIIHNIHVHHCTPSGNTNIRASPTHVGWRGKSDGDGISIFGSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSHFAHHDEVMLLGHDDKYLPDRAMQVTIAFNHFGEGLVQRMPRCRRGYIHVVNNDFTQWQMYAIGGSANPTINSQGNRYTAPGDPDAKEVTKRVETDDREWSGWNWRTEGDIMVNGAFFVPSGGGLSAQYAEATSVQAKSAVQIDQLTMYSGVFGDPRDNGDLYPGFNGGGTVTGATSKGNTEGSSSDDGDFFGMIFKGSSSSSQAAPPSPSSSIVFVSTFLSLFIIFILDTTTNHAILLSLL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1821 500 PANTHER PECTATE LYASE 6 432 - -
Aed1g1821 500 PANTHER PECTATE LYASE 18-RELATED 6 432 IPR045032 GO:0030570
Aed1g1821 500 Pfam Pectate lyase 152 334 IPR002022 -
Aed1g1821 500 Gene3D - 70 412 IPR012334 -
Aed1g1821 500 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Aed1g1821 500 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Aed1g1821 500 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Aed1g1821 500 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Aed1g1821 500 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Aed1g1821 500 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Aed1g1821 500 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Aed1g1821 500 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Aed1g1821 500 SUPERFAMILY Pectin lyase-like 71 399 IPR011050 -
Aed1g1821 500 SMART amb_all 145 342 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1821 Aed-Chr1 15627100 15632584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1821 1 489 Polysaccharide Lyase AT3G53190 62.575 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1821 K01728 - gmx:100808438 929.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1821 1 15627100 15632584 Aed1g1821 1 15627100 15632584 ECH