Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1816 ATGTTTCAGGAGAGCAGCGCGACGCGGTGGCCGACTCAGTCGACTCAGTGGACTCGGTACCACGACAAGCTCTTCGAGAGGGCTCTGCTGGTCGTGCCGGAGGACACGCCGGACCGCTGGGAGAGGATCGCCAACCAGGTTCCGGGCAAGTCGGCGGAGGAAGTCAGGGAACACTACGAAGCTCTCGTTCACGACGTCTTCGAGATCGACTCAGGCCGAGTCGAGGTCCCGAGTTACGTCGATGACCCGGCGGCGGCACCGCCCAGTGACGGTGCTGAAATTTCAACGTGGGACAACGCTAATCAGATCTCATTCGGCTCCAAGCCCAAGCAACAGGGCGGCGACAACGAGAGGAAGAAAGGCACGCCTTGGACTGAAGAGGAACACAGGTTGTTTCTTATTGGGCTGAGCAAATTTGGGAAGGGAGATTGGAGAAGCATTTCAAGAAATGTTGTAGTGACAAGAACTCCAACTCAAGTAGCAAGCCATGCCCAGAAGTACTTTCTCCGCCAGAATTCAGTGAAGAAAGAGAGGAAGAGATCAAGCATCCATGACATAACCACAGTGGACAGTAACTCAGTGCCTGTGCCCATTGATCAGAATTGGGTTCCTCCTCCTGGTAGCGGCAGTGCTGATTCACTGCAGCAGCAGCAGCAGCAGTACCCATCAAGCAACATACATGATCTCTTTGGGTATCCAAACTATGGCTTTGAAATGTAA 720 0.5389 MFQESSATRWPTQSTQWTRYHDKLFERALLVVPEDTPDRWERIANQVPGKSAEEVREHYEALVHDVFEIDSGRVEVPSYVDDPAAAPPSDGAEISTWDNANQISFGSKPKQQGGDNERKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDSNSVPVPIDQNWVPPPGSGSADSLQQQQQQYPSSNIHDLFGYPNYGFEM 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1816 239 MobiDBLite consensus disorder prediction 102 124 - -
Aed1g1816 239 CDD SANT 17 63 IPR001005 -
Aed1g1816 239 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 11 239 - -
Aed1g1816 239 MobiDBLite consensus disorder prediction 206 220 - -
Aed1g1816 239 ProSiteProfiles SANT domain profile. 119 172 IPR017884 -
Aed1g1816 239 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 11 239 IPR043363 -
Aed1g1816 239 Gene3D - 11 76 - -
Aed1g1816 239 ProSiteProfiles Myb-like domain profile. 17 63 IPR001005 -
Aed1g1816 239 Pfam Myb-like DNA-binding domain 123 168 IPR001005 -
Aed1g1816 239 CDD SANT 123 168 IPR001005 -
Aed1g1816 239 Gene3D - 122 174 - -
Aed1g1816 239 SUPERFAMILY Homeodomain-like 118 173 IPR009057 -
Aed1g1816 239 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 119 171 IPR006447 GO:0003677
Aed1g1816 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 116 172 IPR017930 -
Aed1g1816 239 MobiDBLite consensus disorder prediction 179 220 - -
Aed1g1816 239 SUPERFAMILY Homeodomain-like 15 71 IPR009057 -
Aed1g1816 239 ProSiteProfiles Myb-like domain profile. 116 168 IPR001005 -
Aed1g1816 239 SMART sant 120 170 IPR001005 -
Aed1g1816 239 SMART sant 13 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1816 Aed-Chr1 15560860 15562998 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed1g1816 Myb_DNA-binding 4.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1816 - - gmx:547481 419.853