Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1795 ATGACCAAAATACCCCCTGATGTGACTTTTGGGAAGGACCAGCCAGAGCCAGCCACTGCATGCAATGCAACAACAGTTACAGAAGGGAAGGAGGAGGACCTCATCCCAAGTCAGCCAAACACAGCACATAGAGTTTCAGAATCCTTTTTTGCCCTTTCCATGTCAGTGACCCTAAACGGTAACAGTACAGTACACTCTGCCTCCGCTGAATTTCAGACAAACAGTGTCATTCACCCCCTCATCGAATCACTCATCAGGACTCAATTTGCATGTGGGTTTTCCAGAATTCTGATTCAGTTGTGGGGTTCTAGGAGAAAAAGAAACACTCTCTCAGTCACAGCAGAAGAAGAAGGTTATATAATCGTTATATACTATCCAGATGCGGAGGTGATAGCACTATCCCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTACACAGAAGAGGACACAACCTGCCTTGGAAGCTTAAGCAGAAGACAACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGCGTCCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGGATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAGTATGCTGTTCAATCCGATTGGAAAGCCCACTCTAAGACTTGTGGCACCAGAGAATATAGATGTGACTGTGGCACCCTCTTCTCCAGCCTAACACAGGCAGAAGTGGCCATAAGTGTTTGGTTTGTATTTGGCATGTTTGGGGTTGGCTTAAGGGCTAATATTAGATTCTTCATGTTCGAGCTTTGTTTTCTTCTGGGTTGGCTAGATGTGCTCAGTACTGTGCTCTTGCAGTGCAGGCGAGACAGTTTCATCACCCACAGGGCCTTCTGCGATGCACTGGCTCAAGAGAGTGCAAGAGCGCCACCACCGAGCCTCAGCGGTGGCGGCGGAGGCATTGGCAGCCACCTGTACGGAAGCACCTCGAACATGGCCTTAAACCTATCTCAGGTCGGTTCTCAGATATCAAACATGCAGCAAGACCCCAACGCCCAACCCAGCGAGCTCCTCCGCCTCGGCGCCACCGCCGGCGCAGGTCGAACCACCGGGCAGTTCGAACACATGCTCGGTTCAGCCTTCCGAGCCAACTCCAACCAACAACCCTTCTTCATCTCCGAACCCAACCAAGGCTACCACCCCGACCAGCCACAACCACAAGGGTTGGTCGAAAACAAACCCTTCCAACATGGCTTAATGCACCTGTCTGATCACCACCTTAACAACAATTCACCCTTCAACCTTCCCTTTCTCTCCAACAACACAACCAACAACGCTTCGTACTCTGAAGTACACTTCAACAACAATGCCAACGGAGGAGTGAACAACAGCAACAGCAACGAGGGCACTAACTTCTTCACAACTTCAAGTGCACCTTCTCTATTCAGCAACAGTGCCAATGCCAATGCCAATGCTAATGCTTTATCTCACATGTCTGCAACTGCACTGCTTCAGAAAGCCGCACAAATGGGTGCAACTTCGAGCAACAGCACCGCTTCTTTGTTGAAAAGCTTCGGAAGCGCGTCCTCCAGCAGCGCCGGCGGGGGCTCGAAATCTGAACAGCACAACAGGCCACCAACACTGGTGAATGCTGCAAACTATGTTTTCGGAGTGAATAGTAATAATCACGTGAACGAACAGAGTAACAGTAGTAACCTCCAGGATCTTATGAACTCGTTCGCTGTTGGTGGAAGCTCTTCCATTTTCGAAGGTGCAGCGGCGGCAGGGTTTGAAGCATATCATCATCATCATCATCATCATCATCATCATGATAATAGGGACCCAGCAAAGGTGCACGCAATGAGTGGAAGCAGCAGCACCACCATTGGAGGAGGCTCTGATAGGCTCACTCGCGATTTTCTCGGGGTTGGTCAGATAGTGAGAGGAATGAGTACTGGAACTGGAGGAGTTGCGCAGCAGAGAGAACAACAGCAACATGGCTTCAACTTGAGTTCTTTGGAGGCAGAAAGAAATAGCAATAATGCTGCTGCGCCGTCATCAGGGCAAGCTTTTGGAGGTGGTGGAGGGAATTTTCAGTGA 2157 0.4951 MTKIPPDVTFGKDQPEPATACNATTVTEGKEEDLIPSQPNTAHRVSESFFALSMSVTLNGNSTVHSASAEFQTNSVIHPLIESLIRTQFACGFSRILIQLWGSRRKRNTLSVTAEEEGYIIVIYYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSSLTQAEVAISVWFVFGMFGVGLRANIRFFMFELCFLLGWLDVLSTVLLQCRRDSFITHRAFCDALAQESARAPPPSLSGGGGGIGSHLYGSTSNMALNLSQVGSQISNMQQDPNAQPSELLRLGATAGAGRTTGQFEHMLGSAFRANSNQQPFFISEPNQGYHPDQPQPQGLVENKPFQHGLMHLSDHHLNNNSPFNLPFLSNNTTNNASYSEVHFNNNANGGVNNSNSNEGTNFFTTSSAPSLFSNSANANANANALSHMSATALLQKAAQMGATSSNSTASLLKSFGSASSSSAGGGSKSEQHNRPPTLVNAANYVFGVNSNNHVNEQSNSSNLQDLMNSFAVGGSSSIFEGAAAAGFEAYHHHHHHHHHHDNRDPAKVHAMSGSSSTTIGGGSDRLTRDFLGVGQIVRGMSTGTGGVAQQREQQQHGFNLSSLEAERNSNNAAAPSSGQAFGGGGGNFQ 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1795 718 Pfam Zinc-finger double-stranded RNA-binding 144 166 IPR022755 -
Aed1g1795 718 SUPERFAMILY beta-beta-alpha zinc fingers 143 240 IPR036236 -
Aed1g1795 718 MobiDBLite consensus disorder prediction 544 564 - -
Aed1g1795 718 Gene3D Classic Zinc Finger 127 192 - -
Aed1g1795 718 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 166 IPR013087 -
Aed1g1795 718 MobiDBLite consensus disorder prediction 695 718 - -
Aed1g1795 718 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 103 256 - -
Aed1g1795 718 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 304 675 - -
Aed1g1795 718 MobiDBLite consensus disorder prediction 638 652 - -
Aed1g1795 718 MobiDBLite consensus disorder prediction 620 655 - -
Aed1g1795 718 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
Aed1g1795 718 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 103 256 - -
Aed1g1795 718 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 304 675 - -
Aed1g1795 718 SMART c2h2final6 185 215 IPR013087 -
Aed1g1795 718 SMART c2h2final6 144 166 IPR013087 -
Aed1g1795 718 SMART c2h2final6 220 240 IPR013087 -
Aed1g1795 718 Gene3D Classic Zinc Finger 198 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1795 Aed-Chr1 15414413 15419891 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1795 127 675 IDZ Gene Family AT2G02070 42.314 1.52e-111 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed1g1795 zf-C2H2_jaz 4.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1795 K25870 - gmx:100786121 637.876