Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1787 ATGGGTAGTTGTGGAAGAGAAGGATCAGTGAGGCAATATATAAGATCGAAAGTTCCTCGTTTAAGGTGGACTCCTGAGCTGCATCGTTGCTTTGTTCATGCTATCGATAGCCTTGGTGGCCATCATAAGGCTACTCCGAAGCTTGTTCTTCAGTTGATGGATGTTAAAGGGCTCACAATCTCACACGTCAAGAGCCATCTTCAGATGTACAGAAGCATGAGGGGTGACTTGGGCAGACAAGGTAGGACAGGGTCCCAACATAGGAACCAATCTTTAGAGGAGCATGATGATGGATGTGTTGATGAAGTGAATGATGTTGGTGTTGAGTACTCATGTTCGAAACCCATGGGAAGAGAATCTGATTCCTTCTTCGGCCACAGTAATCTCCCTCCAAAAAGAGCAAGAATCGAGACGAGGAGGAGGAGTTGGATCTCAGAGAGCCTGCATTGCAGCCAAAGATTATGTGATGCAGTTTCAACTCCGTACAGTTTTTATGATTATCTGCAGAAGAAGCCCATGGCTGAGCAAAAGGAGTTATGTGAAGAAGCTTCACAACCACAACCACAACCACATTCCCCTCTGCTGCCAGATTTTCCCAACTTCACTTCATTCAAATCTCCTAACCAACAATCTCATTTTCTCCAGGTTAGTAAATTAAATGAAGGGAAGAGAAATTGTTCACAGGCTATTAATGCAGAAGTAGAAGATGAATTGTCATTGTCGCTCACATTGCCAAATCCTTCACCACAGAGAAGTAATGGTTCTTCAGGGAGTGAGATCAGTGAAGCAATCTCATCATGCCCTGGCCCTGGGTTTGGCAACAACTACAAGGACTGCTCTAGTTCATCCACTCACACTGTCAGAGAAAGATCAATTAATTTGGACCTATCTTTAGCCCTATGTGGCAATTGA 912 0.4419 MGSCGREGSVRQYIRSKVPRLRWTPELHRCFVHAIDSLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGDLGRQGRTGSQHRNQSLEEHDDGCVDEVNDVGVEYSCSKPMGRESDSFFGHSNLPPKRARIETRRRSWISESLHCSQRLCDAVSTPYSFYDYLQKKPMAEQKELCEEASQPQPQPHSPLLPDFPNFTSFKSPNQQSHFLQVSKLNEGKRNCSQAINAEVEDELSLSLTLPNPSPQRSNGSSGSEISEAISSCPGPGFGNNYKDCSSSSTHTVRERSINLDLSLALCGN 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1787 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Aed1g1787 303 MobiDBLite consensus disorder prediction 177 196 - -
Aed1g1787 303 MobiDBLite consensus disorder prediction 75 98 - -
Aed1g1787 303 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 168 - -
Aed1g1787 303 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 169 303 - -
Aed1g1787 303 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 72 IPR006447 GO:0003677
Aed1g1787 303 Gene3D - 18 74 - -
Aed1g1787 303 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
Aed1g1787 303 MobiDBLite consensus disorder prediction 242 263 - -
Aed1g1787 303 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Aed1g1787 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 168 IPR044848 GO:0003700
Aed1g1787 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 169 303 IPR044848 GO:0003700
Aed1g1787 303 MobiDBLite consensus disorder prediction 242 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1787 Aed-Chr1 15320507 15324871 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1787 1 77 G2-like Transcription Factor Family AT1G14600 73.171 8.61e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aed1g1787 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1787 - - gmx:100787188 453.366