Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1785 ATGGGACAACATCGATCGATCTCCACTTCAAAGTTCAAACTGCATCCATCCATGGCTGCTCATAGTCACGAAGGGAATGCTATAATCCCACCAATCCGTTTCTGCAAGACTGTTCTTAAAACTAATCTTCAAAGGCTTGTAAGTGAGAGTGAGAAGCCTACTCAAAGTACAACTTCATCGTTGAATTGGCCAACGCAAAGTAGAGCACAGGAAGTAGCAAGAAATTTCATCTCAAACAATCCTTTTTTCACAGTTTTCATAAAGCCTGTTCACGTGGCAGGAATCCAGCTGCCTATACCAGATTTGAAAGGCATTATTGAGAACAAGAGTAAGTATGTGAAGCTGCAGATTGGGGAAAGATCATGGAATGTATTATTGTTGCTCACTACTATTATTTACAACGTTGACTCTTTCTCGTATCGCACGTTGTCTTCTGGCTGGAACTTGTTTACACGTGAAAGTGAACTGCAACCAGGAGACGTTTGTGTGTTTGAACTGATTAATAGGGAGGATCCAGTTTTTAAAGTTCATGTTTTCAAAAACCACACTTAG 552 0.404 MGQHRSISTSKFKLHPSMAAHSHEGNAIIPPIRFCKTVLKTNLQRLVSESEKPTQSTTSSLNWPTQSRAQEVARNFISNNPFFTVFIKPVHVAGIQLPIPDLKGIIENKSKYVKLQIGERSWNVLLLLTTIIYNVDSFSYRTLSSGWNLFTRESELQPGDVCVFELINREDPVFKVHVFKNHT 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1785 183 Pfam B3 DNA binding domain 97 181 IPR003340 GO:0003677
Aed1g1785 183 SUPERFAMILY DNA-binding pseudobarrel domain 78 181 IPR015300 -
Aed1g1785 183 Gene3D - 63 182 IPR015300 -
Aed1g1785 183 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 36 180 IPR044837 -
Aed1g1785 183 ProSiteProfiles B3 DNA-binding domain profile. 120 182 IPR003340 GO:0003677
Aed1g1785 183 SMART B3_2 82 182 IPR003340 GO:0003677
Aed1g1785 183 CDD B3_DNA 81 180 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1785 Aed-Chr1 15293414 15294539 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1785 66 180 REM Transcription Factor Family AT1G49480 33.607 1.41e-13 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed1g1785 B3 2e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1785 - - gsj:114402091 179.874