Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1781 ATGTTTGGAAAAACATTGAAATCGAAATTTATAACAGAACTCCAACTAAAGGAGGAAGACAGCGTTACTCTTCAGACATCTGAGGATAGAAGTTGGGATGCCAAGTTTTGTCAGAATCGTTGCAATGGACAAATATCACTTACTTCTGGCTGGCAGAAATTTGTAACTGAAAATAACTTGAAAACAGGGGATGCATGTGTGTTTGAGCAAATTAAGTCACCAGAGATTTTATTTAAAGTTCATATTTACCGTGATGAAGAAGAATCAACTTGTGAAGATGGAGCAAACCGAAGTAAAGAAACAGGGCTTCCAAAAAAGAATTCAGAGAATGGTAATGTTTTGCGGCAGAGTAAGAGGGAAAGATCCCCATTACCAGTTTCTCGCTCTACCAAGAAGGTGAAAACCAACCCAAGAAAGGAACCTGCAAGTTATCCCACCCAAGAAGATGTTGAAACTAGGAGTGTTCAATATAAGGCGACAAAGGCCAAAAAAAGAGGTGAAAGAGGAATCATGCATGCCAATATGTCTGAGGCTATTCAAAGTTATGGGAACAGTGCTATCCAGAGAGCCCATGCTTTCCGCTCTGATAGTGATAATCCCCTCTTCATTCGTGAAGCCATGCCAATTAATTTCATATCAGAAGACCAACAAAAGAACTTTAAGAGTGTTACTTTTTGGAGTTCTGAGGAGAAAAGTTGGCATGTCAACTTCTATCCGAATCGTATCAGTAATCAAATGATACTAGGTGCTGGTTGGGGAGGTTTTGTTAAGGATAATAACTTGAAAATAGGGAATGTATGTGTTTTTGAGAAAATTGAGAAGCCTGGACTTTCATTTAGAGTTGTTATTTTTCGTGACCAAGAAGAATCAAGTCCATCCAAGATTTCAGCTTATGAGGATGGGGCAAATGGTAGCAAAAAAACAGGGCTTGAAAATAGTTTTGATGAAGGGGACAGTGATGGAATTCCCAAAAAGAACTCAATCATTAAGGTATTGTTATTTGTTACCTTGTGGTTTTCGTGTCACGTTGATTTGTTAACAGGTGGAAGAAGACGGGCAATGTGTTCCAAATCTAAGGCTATAGAAAGTGAAGAGTTGTTAGAAGATACTGAAAGTGGCACAGCTTTAGAGAGAGCCAAGGCTTTCCGCTCTGATAATCCATTGTTTATTCGTGAAATGGAACAAACATGCATTCAAAATAGTGTGCTGTTGATGCCAGGAGATTTCATAACAGAAGAGCAACAAAAGGAGGGTGATGACCATGTTTCTCTTTGGATCTCTGAGGAGAAAAATTCTGAAATTCGTAGATGCAACAACGAAATGTCAGAGAATCACCTCACCCTCCTTATCAAATCGAATAGAAGCAATATGATTATGCCAATGAAATTCGTGAGAAATCATGAAATGGAGAATGTAGCTAAGGTGATCCTGCGAGTTGGGAATGAATCATGGCTTGTGAGGCTAGACCATTATCCAAAGCATAGCTACTGCAAATTAAGTCATGGTTGGCCTGAATTTATGAGTGAATGTCAATTGAAGCCAGGGGATGCTTGTAACCTTGAGTTGGTTGATAAGGACACATTTGTTTTCCAAGTTAGAATTGCAAGATGCATCATCGATTGA 1623 0.3894 MFGKTLKSKFITELQLKEEDSVTLQTSEDRSWDAKFCQNRCNGQISLTSGWQKFVTENNLKTGDACVFEQIKSPEILFKVHIYRDEEESTCEDGANRSKETGLPKKNSENGNVLRQSKRERSPLPVSRSTKKVKTNPRKEPASYPTQEDVETRSVQYKATKAKKRGERGIMHANMSEAIQSYGNSAIQRAHAFRSDSDNPLFIREAMPINFISEDQQKNFKSVTFWSSEEKSWHVNFYPNRISNQMILGAGWGGFVKDNNLKIGNVCVFEKIEKPGLSFRVVIFRDQEESSPSKISAYEDGANGSKKTGLENSFDEGDSDGIPKKNSIIKVLLFVTLWFSCHVDLLTGGRRRAMCSKSKAIESEELLEDTESGTALERAKAFRSDNPLFIREMEQTCIQNSVLLMPGDFITEEQQKEGDDHVSLWISEEKNSEIRRCNNEMSENHLTLLIKSNRSNMIMPMKFVRNHEMENVAKVILRVGNESWLVRLDHYPKHSYCKLSHGWPEFMSECQLKPGDACNLELVDKDTFVFQVRIARCIID 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1781 540 SUPERFAMILY DNA-binding pseudobarrel domain 204 287 IPR015300 -
Aed1g1781 540 ProSiteProfiles B3 DNA-binding domain profile. 442 536 IPR003340 GO:0003677
Aed1g1781 540 CDD B3_DNA 218 285 IPR003340 GO:0003677
Aed1g1781 540 MobiDBLite consensus disorder prediction 112 138 - -
Aed1g1781 540 MobiDBLite consensus disorder prediction 294 318 - -
Aed1g1781 540 PANTHER B3 DOMAIN-CONTAINING 111 286 - -
Aed1g1781 540 PANTHER B3 DOMAIN-CONTAINING 320 435 - -
Aed1g1781 540 PANTHER B3 DOMAIN-CONTAINING 432 536 - -
Aed1g1781 540 PANTHER B3 DOMAIN-CONTAINING 6 85 - -
Aed1g1781 540 SUPERFAMILY DNA-binding pseudobarrel domain 448 537 IPR015300 -
Aed1g1781 540 SUPERFAMILY DNA-binding pseudobarrel domain 8 84 IPR015300 -
Aed1g1781 540 SMART B3_2 2 86 IPR003340 GO:0003677
Aed1g1781 540 SMART B3_2 190 287 IPR003340 GO:0003677
Aed1g1781 540 SMART B3_2 445 536 IPR003340 GO:0003677
Aed1g1781 540 MobiDBLite consensus disorder prediction 89 165 - -
Aed1g1781 540 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 111 286 - -
Aed1g1781 540 MobiDBLite consensus disorder prediction 89 104 - -
Aed1g1781 540 ProSiteProfiles B3 DNA-binding domain profile. 1 86 IPR003340 GO:0003677
Aed1g1781 540 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 320 435 - -
Aed1g1781 540 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 85 - -
Aed1g1781 540 CDD B3_DNA 16 84 IPR003340 GO:0003677
Aed1g1781 540 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 432 536 - -
Aed1g1781 540 Gene3D - 2 88 IPR015300 -
Aed1g1781 540 Gene3D - 180 289 IPR015300 -
Aed1g1781 540 CDD B3_DNA 449 536 IPR003340 GO:0003677
Aed1g1781 540 ProSiteProfiles B3 DNA-binding domain profile. 207 287 IPR003340 GO:0003677
Aed1g1781 540 Pfam B3 DNA binding domain 207 285 IPR003340 GO:0003677
Aed1g1781 540 Pfam B3 DNA binding domain 6 84 IPR003340 GO:0003677
Aed1g1781 540 Pfam B3 DNA binding domain 453 534 IPR003340 GO:0003677
Aed1g1781 540 Gene3D - 367 538 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1781 Aed-Chr1 15278591 15281287 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1781 5 87 REM Transcription Factor Family AT4G33280 34.118 1.20e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed1g1781 B3 1.8e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1781 - - aprc:113871918 182.956