Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed1g1778 | ATGGATACTGGTTTTTGTTTCTTCTGCTTCTGGTGTGTTTGTTCTTCAATTTTGCTCTTGCTTTTTGTCAAAGGAAGTAAGCATAGCCACTTTGCTTCTTTGAGCTCAAAGAGGAAGCTCCACTATCATCACCCAGGTGAGATGAACATCATCATGCAAAACTTAGTAGAGAGACTGAGACCCCTTGTGGGTTTGAATGGATGGGACTATTGTATCTACTGGAAATTGAGTGAAGACCAAAGGTTTCTTGAGTGGTTGGGATGCTGTTGTGCTGGCACTGATATTCAAAGCAATCAAAATGGTGGGGAAGATCATCTTTTCCCTGTCTCTTCATGCAGGGATACTACTTATCCACACCCAAGAACAAAGCCCTGTGATCTTCTTTCCCAACTTTCCACTTCCATACCCATTGATAATTCTGGGATTCATGCACAGACCCTATTAACAAACCAACCCAACTGGGTCAACTATTCCAATAGCATGGATCCTAATATTTTGGAAGAAACAATTGGGACCCAGGTTTTGATTTCGGTGCCAGGTGGACTAGTTGAGCTGTTTGTAACTAAACAAGTGAGTGAAGATCATCAACTGATAGATTTTGTGACAAACCAGTGCATTGAAGCCGTGAACCACTCAATGAGCTTCAACATGCAATCAGACCCACTTATAATAGGGGATGAAAACAATGAAGGGAACAACAACTGCAGGAACAATCAGAGCTTCCAGTACCCTTCAGAACATGTGATGAGTATGGAGCAGCACCGCATTGATCTGTGCAGTTCACCGCTGAACTTCATGCAGCAGTTCAACAACTACAACAGAATGAAGAGCGATGCTTTCTCAGAAGATCAATACCAAGCTGCAGAAGCAGCAGGTTCCTTCCTTCATCACGACAAGCAGCAAGAAGATCATCAGGAGGAGCATGATGTCACGTATCATCAGAAAAGCCTCCTAATGACTACAGATTCACAATTCGTGGAGGCAGCTGCAAAAGATCATGAGGAGGAGAAGGAGTTGCTGAAACATGGTGCTGGTAGATCAGATTCAATGTCAGATTGCAGTGACCAGAACGAAGAAGAGGAAGATGGAAAGTATAGGAGGAGGAATGGGAAAGGGAACCAGTCCAAGAACCTTATGGCTGAGAGGAAGAGAAGGAAGAAACTCAATGACAGGCTATATAACCTTCGTTCTTTGGTTCCGAGGATCTCTAAGCTGGATAGGGCATCAATTCTTGGAGATGCCATTGAGTATGTGAAGGATTTGCAGAAGCAAGTGAAGGAGCTCCAAGATGAGCTTGAGGAGAATGCAGACACTGAAAGCAACTGCATCATGATGAATAATGGAGGTGGTGAACTTGTTGGGCCAAGCTCCGCGGCGGCACAAACTGGGTTGCATGTTGGAACATCTGTCTCAAAACAACAAAAACAGCAGCAGGAAGATGGTACTACTACTACCGTGATGATTGACAACCAGCAGCAGCAGCAGATGGAGCCGCAAGTGGAAGTGGCTCTCATAGATGGGAATGAGTATTTCGTTAAGGTGTTCAGTGAGCACAGGCCTGGTGGCTTTGTCAAACTCATGGAGGCCTTGAACACTATTGCCATGGATGTAGTGCATGCCACTGTAACCAGCCACAAGGGCCTCGTCTCAAATGTTTTTAAAGTCGAAAAGAGGGACAGTGAGATGGTTGAGGCTGAAGATGTAAGAGACTCACTGCTGGAGCTTACACGGAACCGTTATAAAGGGTGGAGTACTCATGAGATGACATCAACGTCTGAAAATGGTGTGGCTAGGGATCAACATCAACTCCACAACCATCAGATAGGTGTCTATCCTAACCAGTTTCATAGTTAA | 1854 | 0.4466 | MDTGFCFFCFWCVCSSILLLLFVKGSKHSHFASLSSKRKLHYHHPGEMNIIMQNLVERLRPLVGLNGWDYCIYWKLSEDQRFLEWLGCCCAGTDIQSNQNGGEDHLFPVSSCRDTTYPHPRTKPCDLLSQLSTSIPIDNSGIHAQTLLTNQPNWVNYSNSMDPNILEETIGTQVLISVPGGLVELFVTKQVSEDHQLIDFVTNQCIEAVNHSMSFNMQSDPLIIGDENNEGNNNCRNNQSFQYPSEHVMSMEQHRIDLCSSPLNFMQQFNNYNRMKSDAFSEDQYQAAEAAGSFLHHDKQQEDHQEEHDVTYHQKSLLMTTDSQFVEAAAKDHEEEKELLKHGAGRSDSMSDCSDQNEEEEDGKYRRRNGKGNQSKNLMAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEENADTESNCIMMNNGGGELVGPSSAAAQTGLHVGTSVSKQQKQQQEDGTTTTVMIDNQQQQQMEPQVEVALIDGNEYFVKVFSEHRPGGFVKLMEALNTIAMDVVHATVTSHKGLVSNVFKVEKRDSEMVEAEDVRDSLLELTRNRYKGWSTHEMTSTSENGVARDQHQLHNHQIGVYPNQFHS | 617 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed1g1778 | 617 | Coils | Coil | 411 | 441 | - | - | |
Aed1g1778 | 617 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 56 | 202 | IPR025610 | - | |
Aed1g1778 | 617 | CDD | ACT_UUR-ACR-like | 512 | 575 | - | - | |
Aed1g1778 | 617 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 372 | 421 | IPR011598 | GO:0046983 | |
Aed1g1778 | 617 | MobiDBLite | consensus disorder prediction | 331 | 345 | - | - | |
Aed1g1778 | 617 | SMART | finulus | 378 | 427 | IPR011598 | GO:0046983 | |
Aed1g1778 | 617 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 141 | 584 | - | - | |
Aed1g1778 | 617 | PANTHER | TRANSCRIPTION FACTOR ABORTED MICROSPORES | 141 | 584 | - | - | |
Aed1g1778 | 617 | CDD | bHLH_AtAMS_like | 375 | 440 | - | - | |
Aed1g1778 | 617 | MobiDBLite | consensus disorder prediction | 331 | 383 | - | - | |
Aed1g1778 | 617 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 374 | 434 | IPR036638 | GO:0046983 | |
Aed1g1778 | 617 | Pfam | Helix-loop-helix DNA-binding domain | 377 | 422 | IPR011598 | GO:0046983 | |
Aed1g1778 | 617 | Gene3D | - | 360 | 437 | IPR036638 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed1g1778 | Aed-Chr1 | 15255596 | 15258915 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed1g1778 | 52 | 592 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT2G16910 | 46.250 | 1.31e-147 | 437 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Aed1g1778 | bHLH-MYC_N | 1.1e-18 | CL0161 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed1g1778 | - | - | gmx:100798282 | 840.491 |