Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1778 ATGGATACTGGTTTTTGTTTCTTCTGCTTCTGGTGTGTTTGTTCTTCAATTTTGCTCTTGCTTTTTGTCAAAGGAAGTAAGCATAGCCACTTTGCTTCTTTGAGCTCAAAGAGGAAGCTCCACTATCATCACCCAGGTGAGATGAACATCATCATGCAAAACTTAGTAGAGAGACTGAGACCCCTTGTGGGTTTGAATGGATGGGACTATTGTATCTACTGGAAATTGAGTGAAGACCAAAGGTTTCTTGAGTGGTTGGGATGCTGTTGTGCTGGCACTGATATTCAAAGCAATCAAAATGGTGGGGAAGATCATCTTTTCCCTGTCTCTTCATGCAGGGATACTACTTATCCACACCCAAGAACAAAGCCCTGTGATCTTCTTTCCCAACTTTCCACTTCCATACCCATTGATAATTCTGGGATTCATGCACAGACCCTATTAACAAACCAACCCAACTGGGTCAACTATTCCAATAGCATGGATCCTAATATTTTGGAAGAAACAATTGGGACCCAGGTTTTGATTTCGGTGCCAGGTGGACTAGTTGAGCTGTTTGTAACTAAACAAGTGAGTGAAGATCATCAACTGATAGATTTTGTGACAAACCAGTGCATTGAAGCCGTGAACCACTCAATGAGCTTCAACATGCAATCAGACCCACTTATAATAGGGGATGAAAACAATGAAGGGAACAACAACTGCAGGAACAATCAGAGCTTCCAGTACCCTTCAGAACATGTGATGAGTATGGAGCAGCACCGCATTGATCTGTGCAGTTCACCGCTGAACTTCATGCAGCAGTTCAACAACTACAACAGAATGAAGAGCGATGCTTTCTCAGAAGATCAATACCAAGCTGCAGAAGCAGCAGGTTCCTTCCTTCATCACGACAAGCAGCAAGAAGATCATCAGGAGGAGCATGATGTCACGTATCATCAGAAAAGCCTCCTAATGACTACAGATTCACAATTCGTGGAGGCAGCTGCAAAAGATCATGAGGAGGAGAAGGAGTTGCTGAAACATGGTGCTGGTAGATCAGATTCAATGTCAGATTGCAGTGACCAGAACGAAGAAGAGGAAGATGGAAAGTATAGGAGGAGGAATGGGAAAGGGAACCAGTCCAAGAACCTTATGGCTGAGAGGAAGAGAAGGAAGAAACTCAATGACAGGCTATATAACCTTCGTTCTTTGGTTCCGAGGATCTCTAAGCTGGATAGGGCATCAATTCTTGGAGATGCCATTGAGTATGTGAAGGATTTGCAGAAGCAAGTGAAGGAGCTCCAAGATGAGCTTGAGGAGAATGCAGACACTGAAAGCAACTGCATCATGATGAATAATGGAGGTGGTGAACTTGTTGGGCCAAGCTCCGCGGCGGCACAAACTGGGTTGCATGTTGGAACATCTGTCTCAAAACAACAAAAACAGCAGCAGGAAGATGGTACTACTACTACCGTGATGATTGACAACCAGCAGCAGCAGCAGATGGAGCCGCAAGTGGAAGTGGCTCTCATAGATGGGAATGAGTATTTCGTTAAGGTGTTCAGTGAGCACAGGCCTGGTGGCTTTGTCAAACTCATGGAGGCCTTGAACACTATTGCCATGGATGTAGTGCATGCCACTGTAACCAGCCACAAGGGCCTCGTCTCAAATGTTTTTAAAGTCGAAAAGAGGGACAGTGAGATGGTTGAGGCTGAAGATGTAAGAGACTCACTGCTGGAGCTTACACGGAACCGTTATAAAGGGTGGAGTACTCATGAGATGACATCAACGTCTGAAAATGGTGTGGCTAGGGATCAACATCAACTCCACAACCATCAGATAGGTGTCTATCCTAACCAGTTTCATAGTTAA 1854 0.4466 MDTGFCFFCFWCVCSSILLLLFVKGSKHSHFASLSSKRKLHYHHPGEMNIIMQNLVERLRPLVGLNGWDYCIYWKLSEDQRFLEWLGCCCAGTDIQSNQNGGEDHLFPVSSCRDTTYPHPRTKPCDLLSQLSTSIPIDNSGIHAQTLLTNQPNWVNYSNSMDPNILEETIGTQVLISVPGGLVELFVTKQVSEDHQLIDFVTNQCIEAVNHSMSFNMQSDPLIIGDENNEGNNNCRNNQSFQYPSEHVMSMEQHRIDLCSSPLNFMQQFNNYNRMKSDAFSEDQYQAAEAAGSFLHHDKQQEDHQEEHDVTYHQKSLLMTTDSQFVEAAAKDHEEEKELLKHGAGRSDSMSDCSDQNEEEEDGKYRRRNGKGNQSKNLMAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEENADTESNCIMMNNGGGELVGPSSAAAQTGLHVGTSVSKQQKQQQEDGTTTTVMIDNQQQQQMEPQVEVALIDGNEYFVKVFSEHRPGGFVKLMEALNTIAMDVVHATVTSHKGLVSNVFKVEKRDSEMVEAEDVRDSLLELTRNRYKGWSTHEMTSTSENGVARDQHQLHNHQIGVYPNQFHS 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1778 617 Coils Coil 411 441 - -
Aed1g1778 617 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 56 202 IPR025610 -
Aed1g1778 617 CDD ACT_UUR-ACR-like 512 575 - -
Aed1g1778 617 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 372 421 IPR011598 GO:0046983
Aed1g1778 617 MobiDBLite consensus disorder prediction 331 345 - -
Aed1g1778 617 SMART finulus 378 427 IPR011598 GO:0046983
Aed1g1778 617 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 141 584 - -
Aed1g1778 617 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 141 584 - -
Aed1g1778 617 CDD bHLH_AtAMS_like 375 440 - -
Aed1g1778 617 MobiDBLite consensus disorder prediction 331 383 - -
Aed1g1778 617 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 374 434 IPR036638 GO:0046983
Aed1g1778 617 Pfam Helix-loop-helix DNA-binding domain 377 422 IPR011598 GO:0046983
Aed1g1778 617 Gene3D - 360 437 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1778 Aed-Chr1 15255596 15258915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1778 52 592 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 46.250 1.31e-147 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed1g1778 bHLH-MYC_N 1.1e-18 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1778 - - gmx:100798282 840.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1778 1 15255596 15258915 Aed1g1778 1 15255596 15258915 ECH