Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1771 ATGGATTTTGATGAGTATGACTATTTAGAGAAAACAGTTGAAAATCCTGAAGTTAAGAAGGATAAACATAGGGCTAATGGTGGGGACAAAACTCTGAAATCCGAAGAGAGAAGGCATAATGGGAGTTCTAAGCATAAGGATAAGGATGATGGTGTTGATCTCCATTCCAAGCATTCAAAATTCGGAGATGACTCCAGGCTGAGAGAAAGAGGTTCATCTCGTCATGCTTCAAAGTCCAGAGATGGAGACAGGGAGAAGGATCAGCACAGAAGCTCCGGGGGCGGTGGTGGTAGGGATAGGAAGAGGGACCATGAGGACAACAAGGATAGGAAGAGAGACAAGGACAGAGACCATGAGGACAACAAGGATAGGAAGAGAGACAGAGATCGCGATCGTGACCAAGAAAGGGACAGAAGGGACCGTGGGAGTGAGCCAGAGCGGGAACGCCGAAGTAGAAGTAGATCTGATAGGCAGCATCAAACTGATTTGCTTGACAAAGACAGAGAGACAAGTCGTGACAGGGACTTTAGAGATAGAGAAAGAAGCCGGGATAAGGATTTCAGAGACAGAGAAAGGGTGGTGAGGGAACGGGAAAGAGAAATCAGACGTCATAAAGAGAAAAAGGAAGAAGCAACAGAACCTGAGGCTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTTTGAAAGCAGATGAAAGAGATGCATACGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCTAAGGGTGTTGGGTATATTGAGTTTTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCGGGTCAACCTCTTCTTGGTCAACCAGTGATGGTAAAGCCATCAGAAGCGGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTAGTGGACTCACTGGACTTGTAGGCCCTTATTCTGGGGGAGCAAGAAAGCTGTATGTTGGCAATCTGCATATCAGTATTACTGAAGCTGATATTCGTGGGGTGTTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTTGATGAAATGGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAGGATGCAAGAAATGCTCAGAGCTTGAATGGTCAATTAGAGATCGGTGGTAGGACAATCAAGGTGTCGGCTGTTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATTTTGATGATGATGAAGGAGGTGGCTTGTCCCTGAATGCATGTTCTCGAGCATTACTCATGCAGAAGTTGGATCGTAGTGGCACTGCATCAAGTATGGTTGGTTCCCTTGGTAATTCTGTGGTCAGCAACACAGGTCTTAATCTACCAGCAACAGGAAACATACTGGCAGCTGCGCCTGTGGGTTCTCCACTGGTTTCACCCCTTTCTTCTGTCCCTGCAGTAGCTGGATTGCCAGGTGGAGGCCTCCAAATTCCCACGGCTACTATTCCTTCTATTGATACAATCGGTGTTCCCAGTGAATGCTTAATGTTGAGGAATATGTTTGATCCCAAAGATGAGGTGGCTAAACTACACACTGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAAAGCTCTAAGTATGGGACATTAAGACACATATACGTTGATAAGAAGAGTGCTGGTTTTGTCTACTTACGATTTGAAGATACCCAATCTGCAATTGGTGCACAGCGGGCCTTGCATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTCATGGTGCCTCAATCATATGAGGATAAATTCCCAGACAGCAGATAA 1851 0.4538 MDFDEYDYLEKTVENPEVKKDKHRANGGDKTLKSEERRHNGSSKHKDKDDGVDLHSKHSKFGDDSRLRERGSSRHASKSRDGDREKDQHRSSGGGGGRDRKRDHEDNKDRKRDKDRDHEDNKDRKRDRDRDRDQERDRRDRGSEPERERRSRSRSDRQHQTDLLDKDRETSRDRDFRDRERSRDKDFRDRERVVREREREIRRHKEKKEEATEPEADPERDQRTVFAYQISLKADERDAYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVASGLTGLVGPYSGGARKLYVGNLHISITEADIRGVFEAFGQVELVQLPLDEMGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMQEVGGNTGDFDDDEGGGLSLNACSRALLMQKLDRSGTASSMVGSLGNSVVSNTGLNLPATGNILAAAPVGSPLVSPLSSVPAVAGLPGGGLQIPTATIPSIDTIGVPSECLMLRNMFDPKDEVAKLHTEPDFDLDIKEDVEAESSKYGTLRHIYVDKKSAGFVYLRFEDTQSAIGAQRALHGRWFAGKMITASFMVPQSYEDKFPDSR 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1771 616 PANTHER CC1-LIKE SPLICING FACTOR 1 612 - -
Aed1g1771 616 Coils Coil 190 210 - -
Aed1g1771 616 CDD RRM3_RBM39_like 516 603 - -
Aed1g1771 616 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 292 IPR000504 GO:0003723
Aed1g1771 616 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 329 398 IPR000504 GO:0003723
Aed1g1771 616 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 612 - -
Aed1g1771 616 MobiDBLite consensus disorder prediction 1 220 - -
Aed1g1771 616 Gene3D - 512 616 IPR012677 -
Aed1g1771 616 CDD RRM1_RBM39_like 224 296 - -
Aed1g1771 616 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 517 605 IPR000504 GO:0003723
Aed1g1771 616 SUPERFAMILY RNA-binding domain, RBD 327 609 IPR035979 GO:0003676
Aed1g1771 616 SMART rrm1_1 328 400 IPR000504 GO:0003723
Aed1g1771 616 SMART rrm1_1 518 601 IPR000504 GO:0003723
Aed1g1771 616 SMART rrm1_1 224 296 IPR000504 GO:0003723
Aed1g1771 616 TIGRFAM SF-CC1: splicing factor, CC1-like family 100 614 IPR006509 GO:0003723|GO:0005634|GO:0006397
Aed1g1771 616 SUPERFAMILY RNA-binding domain, RBD 216 313 IPR035979 GO:0003676
Aed1g1771 616 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 418 530 IPR029123 -
Aed1g1771 616 Gene3D - 153 307 IPR012677 -
Aed1g1771 616 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 300 IPR000504 GO:0003723
Aed1g1771 616 Gene3D - 322 428 IPR012677 -
Aed1g1771 616 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 327 404 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1771 Aed-Chr1 15220822 15229673 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1771 240 390 Eukaryotic Initiation Factors Gene Family AT4G34110 31.373 1.23e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1771 K13091 - gmx:100789839 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1771 1 15220822 15229673 Aed1g1771 1 15220822 15229673 ECH