Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed1g1771 | ATGGATTTTGATGAGTATGACTATTTAGAGAAAACAGTTGAAAATCCTGAAGTTAAGAAGGATAAACATAGGGCTAATGGTGGGGACAAAACTCTGAAATCCGAAGAGAGAAGGCATAATGGGAGTTCTAAGCATAAGGATAAGGATGATGGTGTTGATCTCCATTCCAAGCATTCAAAATTCGGAGATGACTCCAGGCTGAGAGAAAGAGGTTCATCTCGTCATGCTTCAAAGTCCAGAGATGGAGACAGGGAGAAGGATCAGCACAGAAGCTCCGGGGGCGGTGGTGGTAGGGATAGGAAGAGGGACCATGAGGACAACAAGGATAGGAAGAGAGACAAGGACAGAGACCATGAGGACAACAAGGATAGGAAGAGAGACAGAGATCGCGATCGTGACCAAGAAAGGGACAGAAGGGACCGTGGGAGTGAGCCAGAGCGGGAACGCCGAAGTAGAAGTAGATCTGATAGGCAGCATCAAACTGATTTGCTTGACAAAGACAGAGAGACAAGTCGTGACAGGGACTTTAGAGATAGAGAAAGAAGCCGGGATAAGGATTTCAGAGACAGAGAAAGGGTGGTGAGGGAACGGGAAAGAGAAATCAGACGTCATAAAGAGAAAAAGGAAGAAGCAACAGAACCTGAGGCTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTTTGAAAGCAGATGAAAGAGATGCATACGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCTAAGGGTGTTGGGTATATTGAGTTTTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCGGGTCAACCTCTTCTTGGTCAACCAGTGATGGTAAAGCCATCAGAAGCGGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTAGTGGACTCACTGGACTTGTAGGCCCTTATTCTGGGGGAGCAAGAAAGCTGTATGTTGGCAATCTGCATATCAGTATTACTGAAGCTGATATTCGTGGGGTGTTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTTGATGAAATGGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAGGATGCAAGAAATGCTCAGAGCTTGAATGGTCAATTAGAGATCGGTGGTAGGACAATCAAGGTGTCGGCTGTTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATTTTGATGATGATGAAGGAGGTGGCTTGTCCCTGAATGCATGTTCTCGAGCATTACTCATGCAGAAGTTGGATCGTAGTGGCACTGCATCAAGTATGGTTGGTTCCCTTGGTAATTCTGTGGTCAGCAACACAGGTCTTAATCTACCAGCAACAGGAAACATACTGGCAGCTGCGCCTGTGGGTTCTCCACTGGTTTCACCCCTTTCTTCTGTCCCTGCAGTAGCTGGATTGCCAGGTGGAGGCCTCCAAATTCCCACGGCTACTATTCCTTCTATTGATACAATCGGTGTTCCCAGTGAATGCTTAATGTTGAGGAATATGTTTGATCCCAAAGATGAGGTGGCTAAACTACACACTGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAAAGCTCTAAGTATGGGACATTAAGACACATATACGTTGATAAGAAGAGTGCTGGTTTTGTCTACTTACGATTTGAAGATACCCAATCTGCAATTGGTGCACAGCGGGCCTTGCATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTCATGGTGCCTCAATCATATGAGGATAAATTCCCAGACAGCAGATAA | 1851 | 0.4538 | MDFDEYDYLEKTVENPEVKKDKHRANGGDKTLKSEERRHNGSSKHKDKDDGVDLHSKHSKFGDDSRLRERGSSRHASKSRDGDREKDQHRSSGGGGGRDRKRDHEDNKDRKRDKDRDHEDNKDRKRDRDRDRDQERDRRDRGSEPERERRSRSRSDRQHQTDLLDKDRETSRDRDFRDRERSRDKDFRDRERVVREREREIRRHKEKKEEATEPEADPERDQRTVFAYQISLKADERDAYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVASGLTGLVGPYSGGARKLYVGNLHISITEADIRGVFEAFGQVELVQLPLDEMGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMQEVGGNTGDFDDDEGGGLSLNACSRALLMQKLDRSGTASSMVGSLGNSVVSNTGLNLPATGNILAAAPVGSPLVSPLSSVPAVAGLPGGGLQIPTATIPSIDTIGVPSECLMLRNMFDPKDEVAKLHTEPDFDLDIKEDVEAESSKYGTLRHIYVDKKSAGFVYLRFEDTQSAIGAQRALHGRWFAGKMITASFMVPQSYEDKFPDSR | 616 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed1g1771 | 616 | PANTHER | CC1-LIKE SPLICING FACTOR | 1 | 612 | - | - | |
Aed1g1771 | 616 | Coils | Coil | 190 | 210 | - | - | |
Aed1g1771 | 616 | CDD | RRM3_RBM39_like | 516 | 603 | - | - | |
Aed1g1771 | 616 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 234 | 292 | IPR000504 | GO:0003723 | |
Aed1g1771 | 616 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 329 | 398 | IPR000504 | GO:0003723 | |
Aed1g1771 | 616 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 1 | 612 | - | - | |
Aed1g1771 | 616 | MobiDBLite | consensus disorder prediction | 1 | 220 | - | - | |
Aed1g1771 | 616 | Gene3D | - | 512 | 616 | IPR012677 | - | |
Aed1g1771 | 616 | CDD | RRM1_RBM39_like | 224 | 296 | - | - | |
Aed1g1771 | 616 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 517 | 605 | IPR000504 | GO:0003723 | |
Aed1g1771 | 616 | SUPERFAMILY | RNA-binding domain, RBD | 327 | 609 | IPR035979 | GO:0003676 | |
Aed1g1771 | 616 | SMART | rrm1_1 | 328 | 400 | IPR000504 | GO:0003723 | |
Aed1g1771 | 616 | SMART | rrm1_1 | 518 | 601 | IPR000504 | GO:0003723 | |
Aed1g1771 | 616 | SMART | rrm1_1 | 224 | 296 | IPR000504 | GO:0003723 | |
Aed1g1771 | 616 | TIGRFAM | SF-CC1: splicing factor, CC1-like family | 100 | 614 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
Aed1g1771 | 616 | SUPERFAMILY | RNA-binding domain, RBD | 216 | 313 | IPR035979 | GO:0003676 | |
Aed1g1771 | 616 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 418 | 530 | IPR029123 | - | |
Aed1g1771 | 616 | Gene3D | - | 153 | 307 | IPR012677 | - | |
Aed1g1771 | 616 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 223 | 300 | IPR000504 | GO:0003723 | |
Aed1g1771 | 616 | Gene3D | - | 322 | 428 | IPR012677 | - | |
Aed1g1771 | 616 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 327 | 404 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed1g1771 | Aed-Chr1 | 15220822 | 15229673 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed1g1771 | 240 | 390 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 31.373 | 1.23e-12 | 68.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed1g1771 | K13091 | - | gmx:100789839 | 829.706 |