Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1745 ATGGAGAACGACACCACCGCCGCCGCCACCAACAATAACAGCGCCACTGCGAAAGCAGGTTCTGGAGGAGTGAAATCGAACAACCTTAACCTAGAAGAGGAGCATTCGAATTTGAATGGCGAGGAGCACATGGCAGAACAAGTGGAGGCAACAGAAGAGGAAGAAGAAGATCGAGTAGCCGATGAAGGCGAAGGAGAACAAACTGGATCTGCCCCCAACCCTCGCCAACCTTTAAGAACCCCTTTCACTAATCTCAGCCAGGTCGATGCTGACCTCGCTCTCGCTCGAACCCTTCAGGAGCAGAGGGAAATGGCAGCTAGACTTTTGGCTCTTGCTGGGATAAATGATCGGGAGGAGGAGGAGGAGGACATAGAGGAGGAGCATGGTGCTAATTCTCAGGATGCTTGGGAGGATGTTGATCCAGATGAACTTTCATACGAGGAATTACTGGCATTGGGTGAAGTAGTTGGAACTGAGAGCAGAGGTCTTTCAACTGATACTCTTGCCTGTTTGCCTTCAGTCAACTACAAGACTGGGAGTGATCAGCATGGAAGCCATGATTCGTGTGTTATTTGCCGGGTGGACTATGAGGATGGTGAGTCCTTGACAGTTCTTTCTTGCAGACACCTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCAGTTTGTAGTACCGAGGTATCTGCTTCTGGGAGCAACTTGTAG 723 0.4938 MENDTTAAATNNNSATAKAGSGGVKSNNLNLEEEHSNLNGEEHMAEQVEATEEEEEDRVADEGEGEQTGSAPNPRQPLRTPFTNLSQVDADLALARTLQEQREMAARLLALAGINDREEEEEDIEEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTLACLPSVNYKTGSDQHGSHDSCVICRVDYEDGESLTVLSCRHLYHPECINNWLKINKVCPVCSTEVSASGSNL 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1745 240 ProSiteProfiles Zinc finger RING-type profile. 189 230 IPR001841 -
Aed1g1745 240 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 36 102 IPR043312 -
Aed1g1745 240 SUPERFAMILY RING/U-box 188 234 - -
Aed1g1745 240 MobiDBLite consensus disorder prediction 117 139 - -
Aed1g1745 240 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 100 238 - -
Aed1g1745 240 SMART ring_2 189 229 IPR001841 -
Aed1g1745 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 236 IPR013083 -
Aed1g1745 240 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 100 238 IPR043312 -
Aed1g1745 240 CDD RING-H2_PA-TM-RING 189 229 - -
Aed1g1745 240 MobiDBLite consensus disorder prediction 47 62 - -
Aed1g1745 240 Coils Coil 38 58 - -
Aed1g1745 240 MobiDBLite consensus disorder prediction 1 81 - -
Aed1g1745 240 Pfam Ring finger domain 187 229 IPR001841 -
Aed1g1745 240 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 36 102 - -
Aed1g1745 240 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1745 Aed-Chr1 15038782 15043150 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1745 105 233 C3H Transcription Factor Family AT3G63530 48.120 2.56e-36 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1745 K19045 - gmx:100306465 273.478