Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed1g1745 | ATGGAGAACGACACCACCGCCGCCGCCACCAACAATAACAGCGCCACTGCGAAAGCAGGTTCTGGAGGAGTGAAATCGAACAACCTTAACCTAGAAGAGGAGCATTCGAATTTGAATGGCGAGGAGCACATGGCAGAACAAGTGGAGGCAACAGAAGAGGAAGAAGAAGATCGAGTAGCCGATGAAGGCGAAGGAGAACAAACTGGATCTGCCCCCAACCCTCGCCAACCTTTAAGAACCCCTTTCACTAATCTCAGCCAGGTCGATGCTGACCTCGCTCTCGCTCGAACCCTTCAGGAGCAGAGGGAAATGGCAGCTAGACTTTTGGCTCTTGCTGGGATAAATGATCGGGAGGAGGAGGAGGAGGACATAGAGGAGGAGCATGGTGCTAATTCTCAGGATGCTTGGGAGGATGTTGATCCAGATGAACTTTCATACGAGGAATTACTGGCATTGGGTGAAGTAGTTGGAACTGAGAGCAGAGGTCTTTCAACTGATACTCTTGCCTGTTTGCCTTCAGTCAACTACAAGACTGGGAGTGATCAGCATGGAAGCCATGATTCGTGTGTTATTTGCCGGGTGGACTATGAGGATGGTGAGTCCTTGACAGTTCTTTCTTGCAGACACCTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCAGTTTGTAGTACCGAGGTATCTGCTTCTGGGAGCAACTTGTAG | 723 | 0.4938 | MENDTTAAATNNNSATAKAGSGGVKSNNLNLEEEHSNLNGEEHMAEQVEATEEEEEDRVADEGEGEQTGSAPNPRQPLRTPFTNLSQVDADLALARTLQEQREMAARLLALAGINDREEEEEDIEEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTLACLPSVNYKTGSDQHGSHDSCVICRVDYEDGESLTVLSCRHLYHPECINNWLKINKVCPVCSTEVSASGSNL | 240 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed1g1745 | 240 | ProSiteProfiles | Zinc finger RING-type profile. | 189 | 230 | IPR001841 | - | |
Aed1g1745 | 240 | PANTHER | E3 UBIQUITIN LIGASE BIG BROTHER-RELATED | 36 | 102 | IPR043312 | - | |
Aed1g1745 | 240 | SUPERFAMILY | RING/U-box | 188 | 234 | - | - | |
Aed1g1745 | 240 | MobiDBLite | consensus disorder prediction | 117 | 139 | - | - | |
Aed1g1745 | 240 | PANTHER | E3 UBIQUITIN LIGASE BIG BROTHER-RELATED | 100 | 238 | - | - | |
Aed1g1745 | 240 | SMART | ring_2 | 189 | 229 | IPR001841 | - | |
Aed1g1745 | 240 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 236 | IPR013083 | - | |
Aed1g1745 | 240 | PANTHER | E3 UBIQUITIN LIGASE BIG BROTHER-RELATED | 100 | 238 | IPR043312 | - | |
Aed1g1745 | 240 | CDD | RING-H2_PA-TM-RING | 189 | 229 | - | - | |
Aed1g1745 | 240 | MobiDBLite | consensus disorder prediction | 47 | 62 | - | - | |
Aed1g1745 | 240 | Coils | Coil | 38 | 58 | - | - | |
Aed1g1745 | 240 | MobiDBLite | consensus disorder prediction | 1 | 81 | - | - | |
Aed1g1745 | 240 | Pfam | Ring finger domain | 187 | 229 | IPR001841 | - | |
Aed1g1745 | 240 | PANTHER | E3 UBIQUITIN LIGASE BIG BROTHER-RELATED | 36 | 102 | - | - | |
Aed1g1745 | 240 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed1g1745 | Aed-Chr1 | 15038782 | 15043150 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed1g1745 | 105 | 233 | C3H Transcription Factor Family | AT3G63530 | 48.120 | 2.56e-36 | 127 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed1g1745 | K19045 | - | gmx:100306465 | 273.478 |