Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1741 ATGTCTTCCGGCGGCGGCGGCGGCGGAGCGAAGCCGTTCTTCTGCCACATGTGCAGTCAGAGGATCACGTGCTCCGATGAGTCGGAACCCTTCTGCCCGATCTGTATGGAAAGTTTCGTTGAGGAATGCAACCCTAACAACCCAAACTCTAGCCTTCTAATCCCCGAGAGTGACGATTCCTCCGATCCCGAACTCCCCTTCTTCCCCTTTTCACTGCTTCCTCTTTTACTAGCATCCTCCAGGAACCGATCCGAACCCGACACGTTCGACCCGATGGTTTTCCTCCAAAACCACCTTCAGGACCTTGGCGCCAACATTCAAGTTGACTATGACAACCCTTCAGAGCAAGGGTTTCGCCTTCCGTCCAACATCGGCGACTACTTCATGGGCCCTGGCCTCGAGCAGTTGATTCAGCAGATCGCCGACAACGACCCCAACCGCTACGGCACTCCGCCCGCTGCCAAGGACGCCATCGAGAATCTCCCCACCATAGCCGTCGACGACGAGTTGCTGAACTCGGAGCTGAACCAGTGCGCCGTCTGCCAGGACGAGTTCGAGAAGGGTTCTCAGGTCACGCAGATGCCCTGCAAGCACGCTTATCACGGTGACTGCTTGATTCCGTGGCTTCGGCTGCATAACTCTTGCCCTGTCTGTCGGTATGAATTGCCCACCGACGACGCCGATTACGAGAATCGGACGCAAGGAAACGCCGACGGTGACGGTGGGTCGAGGACTGGTGGGAGCGACAGTGGTGGTGGAGAGGAAGGGGGGACTAATAGAGCTAGTCGCAGGACTGTTAGAATTTTATTACGGAACCCTGATGCTGGTGGCTCTGCGCAGGACACTTCCGAAAGAAGAGGATGGGGATGGGGAACTTGGGACTGA 885 0.5684 MSSGGGGGGAKPFFCHMCSQRITCSDESEPFCPICMESFVEECNPNNPNSSLLIPESDDSSDPELPFFPFSLLPLLLASSRNRSEPDTFDPMVFLQNHLQDLGANIQVDYDNPSEQGFRLPSNIGDYFMGPGLEQLIQQIADNDPNRYGTPPAAKDAIENLPTIAVDDELLNSELNQCAVCQDEFEKGSQVTQMPCKHAYHGDCLIPWLRLHNSCPVCRYELPTDDADYENRTQGNADGDGGSRTGGSDSGGGEEGGTNRASRRTVRILLRNPDAGGSAQDTSERRGWGWGTWD 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1741 294 SUPERFAMILY RING/U-box 157 225 - -
Aed1g1741 294 MobiDBLite consensus disorder prediction 229 294 - -
Aed1g1741 294 Pfam Ring finger domain 176 219 IPR001841 -
Aed1g1741 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 225 IPR013083 -
Aed1g1741 294 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Aed1g1741 294 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 276 - -
Aed1g1741 294 PANTHER OS06G0101300 PROTEIN 8 276 - -
Aed1g1741 294 SMART ring_2 178 218 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1741 Aed-Chr1 15024257 15025141 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1741 122 263 C3H Transcription Factor Family AT5G01980 41.060 6.54e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1741 K11982 - gmx:100785289 426.017