Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1728 ATGTCGGAAGCACCACCGTCTCAGCCACCGCCTCCAACCGCCGACGCCTCACCGCCGCCCTACTGGTGCTACCACTGCGACAAGCGCGTCTCCGTCGAATCGCTCGCGAATCTCCCCGACGTCGTTTGCGGCGAGTGCAAGAACGGCTTCGTTGAATCCATCCCCACGCCGTCGCGCTCCCGCTCCCCCTCCGCCTCCTCCGACGACCCCTACTTCGGCTCACAGTTCCTCCAGGTCCTTCGCCTAATCGCGCAGTCGGCACGTGACGACGACGCGTCTCCTCCTCCTCCGCCGAGCCGGTCTCCGGAGAACGATTTCCTCAGGATCGAGCTCGGCGGCTGGGACAACGACGAGGAGAACGAAAACGACAGCGACGACGATAACGGCGACGAGGAGTTCGAGGAACACGAGGAGGCCGATGATCGGTCCGGCATCGAGGATCCGCACGGAGACGACGAGGATCTGAGACGAAGGAGGCGTGAGCTGCTTCGGCTTCGGATTAGGGATTTGGCGACGCGCACCAGGAGTATGCGGAACCGGATCTTGGATTGGGCCGAGATTCTGATGGGCCTGGAGGACAATTCCATCGAGTTCCGCCTCCAGCTGCCGGAATCCGACCGCTACGTCGGGAATCCGGAGGATTACGTCGACGCGGCGGAGTACGAGGCGCTGCTTCAGACGCTGGCGGAGAGCGACGGCGGAAGCAGGAGAGGAGCTCCGCCGGCGTCAAAGGCGGCGATGGAAGCCTTGCCGACGGTGAAGATTGCGTCGGGAAGCGAAACCGTGACGTGCGCTATATGTAAGGATTTGCTCGGCGTTGGAGACTCCGCGAAGAGGTTACCGTGCGGGCATCGGTATCATGGCGATTGCATTGTTCCTTGGTTGAGTTCGAGAAATTCTTGCCCTGTTTGCAGGTTTGAGCTGCCAACGGATGATAAGGAATACGAGGAAGAGAGAGTGGTTAATGCCGCTTCTTCGAATTCTAACGGAGCTTCGAGTTCCGGTGGAGGAGGAAGTGCCATTGTTTGA 1029 0.6074 MSEAPPSQPPPPTADASPPPYWCYHCDKRVSVESLANLPDVVCGECKNGFVESIPTPSRSRSPSASSDDPYFGSQFLQVLRLIAQSARDDDASPPPPPSRSPENDFLRIELGGWDNDEENENDSDDDNGDEEFEEHEEADDRSGIEDPHGDDEDLRRRRRELLRLRIRDLATRTRSMRNRILDWAEILMGLEDNSIEFRLQLPESDRYVGNPEDYVDAAEYEALLQTLAESDGGSRRGAPPASKAAMEALPTVKIASGSETVTCAICKDLLGVGDSAKRLPCGHRYHGDCIVPWLSSRNSCPVCRFELPTDDKEYEEERVVNAASSNSNGASSSGGGGSAIV 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1728 342 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 35 337 - -
Aed1g1728 342 ProSiteProfiles Zinc finger RING-type profile. 264 305 IPR001841 -
Aed1g1728 342 MobiDBLite consensus disorder prediction 321 342 - -
Aed1g1728 342 Pfam zinc-ribbon 21 54 IPR039525 GO:0061630
Aed1g1728 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 311 IPR013083 -
Aed1g1728 342 SUPERFAMILY RING/U-box 259 311 - -
Aed1g1728 342 MobiDBLite consensus disorder prediction 53 73 - -
Aed1g1728 342 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 35 337 - -
Aed1g1728 342 MobiDBLite consensus disorder prediction 113 153 - -
Aed1g1728 342 Pfam Ring finger domain 263 305 IPR001841 -
Aed1g1728 342 MobiDBLite consensus disorder prediction 116 141 - -
Aed1g1728 342 MobiDBLite consensus disorder prediction 48 73 - -
Aed1g1728 342 SMART ring_2 264 304 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1728 Aed-Chr1 14969651 14970679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1728 175 317 C3H Transcription Factor Family AT5G01980 48.667 3.17e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1728 - - gmx:100780991 515.768