Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1713 ATGGATGACTTTATATATATTAGTTCATCAGATGATGACTTGGAGGAGATAGAAGATCCAAAGAGGACTCTTCCGCAATGGGCTGCCACTACTGAAAAGAGTTTAGATTCTGGTGGATGGTCTAGGCGGGATAGTGCTTCAAGAGGGGCAAATAGTTCAAACCCTAGCTCTTCTAATGTTTATAATCATTCACAAGTCAAGCCTCATACCCTACCTGTGTACAGCACCAATACATTGAACCACAGAATTGCACAAAGAGATGAACCTTCCTACCATGCCCAGAATGGAAACACAAGTCAGCAACAAACAGTTAATTCCCGAATTTCAAATACTCATGGTGCAGATTATGAGAAAATGTCATCTCAGCAAGCTTTCAAGAGGACCCTTCCGTCATCTCTTCAACCTTCTGCAACTAGGGCTCTTCCTTCTTCGTCATTTGCATCAGGTAGCAGATTAAGCAACTTAAAAGATAATGTGAGCAGCAGTCAACTTCATGATGCATATAAGAATCGTCGCCATGGAGTTGGACCTAGCACATCCAGTGACAGGGGCAACATTCGTGACAGTTTTAGCAGGGGCTATGATGAAGACCGTTTCTTGTATCAAAATGGTGGGAATAGGATGCTTCCTTCATCTTCTTTGATGCTTGGAAAGGCCATAACTCCACAGTTTGCTACTTCTAGTGAATCTGCGTATCGTTCTGGTGTAGGTGATGAAAGGGCTTCTGGAAATGACGAGAGACTAATTTATGAGGCAGCATTACAGGATATCAGTCAACCTAAAACAGAAACTGACTTACCTGCTGGTTTATTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTGGCTTGGACAGTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGCCTTGGAAAAACAATTTCAATGATTTCCCTCATCCTGGCACAGAGGGCATTACAGTCAAAATCGAAAACAGATGACACTGTTAATCATAAAGCTGAAGCTTTGAATTTGGATGATGACGATGACAACAGTGGTAGTGTTGATGTGGAAAAGCATAAAAGTAGTGAAGCAACTGATGATGTAAAACCAAGCAGTTCAACACAGGTGCTCAGTAGAAAAAGGCCAGCTGCTGGTACACTAGTTGTCTGCCCTGCTAGTGTTCTTAGACAGTGGGCCAGGGAACTTGATGAAAAAGTTGGAGATGAAAAGCTTTCTGTTTTGGTTTATCATGGGGGGAGTAGGACAAAAGATCCTGTTGAACTTGCAAAATTTGATGTGGTTCTCACAACATACTCCATTGTGACTAATGAAGTACCCAAGCAACCATTAGTTGAGGAGGAGGATATTGATGAAAAAAATGGTGAAAGATTTGGGCTATCCTCTGAATTTTCTGTTAGTAAAAAGAGGAAAAAGCCATTTAATGGAAATAAGAAGAGTAAAAAGGGTAGAAAAGGAATTGACAGTTCTTCTATTGAATGTGGTTCCGGTCCTCTTGCAAAAGTAGGTTGGTTTAGGGTCATTTTAGATGAGGCTCAAACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTAGAGCTAAAAGACGGTGGTGCTTATCTGGAACCCCTATTCAAAATACTATTGATGACTTGTATAGCTACTTTAGGTTCCTAAAGTATGATCCATATGCTGTATATAAATCATTCTACCATACGATAAAAGCTCCAATATCCAGAGATCCTATTCAAGGGTACAAGAAACTTCAAGCAGTTTTAAGGGCTATAATGCTACGTCGCACAAAAGGAACTTTGCTTGATGGGAAGCCAATAATTGATTTGCCTCCTAAAACAATTGAGCTCAGTAAAGTGGATTTCTCCATTGAGGAGCGGGCATTCTACACCAAGTTGGAATCAGACTCGCGTAATCAATTTAAGGCATATGCTGCTGCTGGGACAGTGAGCCAAAACTATGCTAATATTCTTTTAATGCTTTTACGTCTCCGGCAGGCTTGTGACCACCCGCTTCTTGTTAAAGATTATGATTCTGATCCTGTTGGGAAAGATTCTGTTGAAATGGCAAAAAATCTTCCAAGGGAAATGCTGATTAATCTGTTTAATTGTTTGGAAGAAACCTTTGCTATATGTCATGTTTGCCATGATCCTCCTGACGACCCTGTTATTACAATGTGTGGCCATGTCTACTGTTATCAGTGTGTATCAGAATATTTGACTGGTGATGATAATATGTGCCCTGAAGTTAAGTGTAAAGAACTAATTGGCGAAGATCTTGTTTTCTCCAAATCTACTTTGAGGAGTTGCATCTCTGATGATGGTGGCAGTGTTAGTTCTGCAAATTCACAGCTTTGTGATTATTCACTAGTGCAGCAGTGTGACTACACTTCATCTAAAATCAAAGCTGTTCTTGAGGTTCTGCAGTCAAACTGTAAATTGAAGATTTCTAGTTCTGACTTGCCAAACTCCTCTGGAGGTTGTAGAGATTCACCATCTTCAGATAATTTATATTTTGAAGACTGTGATTCAGATGGGGTTACAAAACACACAAGAAGGTATTCAGAGTCCACAACCGAAGGACCAATAAAGGCTATAGTTTTTTCCCAGTGGACTAGCATGTTGGACTTAGTTGAGACATCGTTGAGACAATTTGGTATAGTGTTCCGGAGACTTGATGGTAGGATGACTCTGGGTGCGAGGGACAGAGCTGTTAGGGAATTCAACACTCAACCAGAGATAACTGTTATGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTGAATATGGTTGCTGCATGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCTCACAGAATTGGACAAACTCGTCCTGTTACAGTGACACGGATCACTATAAAAGATACAGTTGAAGATAGGATATTGTCTCTTCAGGATGAAAAGAGAAAAATGGTAGCATCTGCTTTTGGGGAAGACCATGCCGGGGCTTCTGGAACTCGCCTTACAGTGGATGATCTGAAATATCTTTTCATGGTTTGA 3069 0.408 MDDFIYISSSDDDLEEIEDPKRTLPQWAATTEKSLDSGGWSRRDSASRGANSSNPSSSNVYNHSQVKPHTLPVYSTNTLNHRIAQRDEPSYHAQNGNTSQQQTVNSRISNTHGADYEKMSSQQAFKRTLPSSLQPSATRALPSSSFASGSRLSNLKDNVSSSQLHDAYKNRRHGVGPSTSSDRGNIRDSFSRGYDEDRFLYQNGGNRMLPSSSLMLGKAITPQFATSSESAYRSGVGDERASGNDERLIYEAALQDISQPKTETDLPAGLLSVSLLRHQKIALAWTVQKETKSLHCLGGILADDQGLGKTISMISLILAQRALQSKSKTDDTVNHKAEALNLDDDDDNSGSVDVEKHKSSEATDDVKPSSSTQVLSRKRPAAGTLVVCPASVLRQWARELDEKVGDEKLSVLVYHGGSRTKDPVELAKFDVVLTTYSIVTNEVPKQPLVEEEDIDEKNGERFGLSSEFSVSKKRKKPFNGNKKSKKGRKGIDSSSIECGSGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYHTIKAPISRDPIQGYKKLQAVLRAIMLRRTKGTLLDGKPIIDLPPKTIELSKVDFSIEERAFYTKLESDSRNQFKAYAAAGTVSQNYANILLMLLRLRQACDHPLLVKDYDSDPVGKDSVEMAKNLPREMLINLFNCLEETFAICHVCHDPPDDPVITMCGHVYCYQCVSEYLTGDDNMCPEVKCKELIGEDLVFSKSTLRSCISDDGGSVSSANSQLCDYSLVQQCDYTSSKIKAVLEVLQSNCKLKISSSDLPNSSGGCRDSPSSDNLYFEDCDSDGVTKHTRRYSESTTEGPIKAIVFSQWTSMLDLVETSLRQFGIVFRRLDGRMTLGARDRAVREFNTQPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILSLQDEKRKMVASAFGEDHAGASGTRLTVDDLKYLFMV 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1713 1022 CDD DEXDc_SHPRH-like 275 601 - -
Aed1g1713 1022 ProSiteProfiles Zinc finger RING-type profile. 717 756 IPR001841 -
Aed1g1713 1022 Pfam SNF2-related domain 288 678 IPR000330 GO:0005524|GO:0140658
Aed1g1713 1022 SMART ring_2 717 755 IPR001841 -
Aed1g1713 1022 Pfam Zinc finger, C3HC4 type (RING finger) 717 753 IPR018957 GO:0046872
Aed1g1713 1022 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 710 767 IPR013083 -
Aed1g1713 1022 MobiDBLite consensus disorder prediction 113 189 - -
Aed1g1713 1022 ProSitePatterns Zinc finger RING-type signature. 732 741 IPR017907 -
Aed1g1713 1022 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 1021 IPR027417 -
Aed1g1713 1022 MobiDBLite consensus disorder prediction 473 494 - -
Aed1g1713 1022 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 47 1021 - -
Aed1g1713 1022 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 261 601 IPR027417 -
Aed1g1713 1022 MobiDBLite consensus disorder prediction 338 378 - -
Aed1g1713 1022 MobiDBLite consensus disorder prediction 27 68 - -
Aed1g1713 1022 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 290 563 IPR014001 -
Aed1g1713 1022 MobiDBLite consensus disorder prediction 350 364 - -
Aed1g1713 1022 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 47 1021 - -
Aed1g1713 1022 SUPERFAMILY RING/U-box 714 767 - -
Aed1g1713 1022 CDD SF2_C_SNF 865 973 - -
Aed1g1713 1022 Gene3D - 616 1021 IPR027417 -
Aed1g1713 1022 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 851 1017 IPR001650 -
Aed1g1713 1022 MobiDBLite consensus disorder prediction 113 165 - -
Aed1g1713 1022 Gene3D - 368 455 IPR038718 -
Aed1g1713 1022 MobiDBLite consensus disorder prediction 1 68 - -
Aed1g1713 1022 SMART helicmild6 881 964 IPR001650 -
Aed1g1713 1022 Gene3D - 466 614 IPR038718 -
Aed1g1713 1022 Gene3D - 249 336 IPR038718 -
Aed1g1713 1022 SMART ultradead3 271 578 IPR014001 -
Aed1g1713 1022 Pfam Helicase conserved C-terminal domain 867 964 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1713 Aed-Chr1 14891470 14903680 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1713 1 922 RAD5 or RAD16-like Gene Family AT1G50410 54.701 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed1g1713 SNF2_N 2.8e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1713 - - gmx:100795142 1781.53